Sfoglia per Autore
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
2018-01-01 Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Gorfer, Valentina; Fedi, Sabina; Armanini, Federica; Truong, Duy Tin; Manara, Serena; Zolfo, Moreno; Beghini, Francesco; Bertorelli, Roberto; De Sanctis, Veronica; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Turroni, Francesca; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Viappiani, Alice; Yassour, Moran; Vlamakis, Hera; Xavier, Ramnik; Collado, Carmen Maria; Koren, Omry; Tateo, Saverio; Soffiati, Massimo; Pedrotti, Anna; Ventura, Marco; Huttenhower, Curtis; Bork, Peer; Segata, Nicola
Profiling microbial strains in urban environments using metagenomic sequencing data
2018-01-01 Zolfo, Moreno; Asnicar, Francesco; Manghi, Paolo; Pasolli, Edoardo; Tett, Adrian; Segata, Nicola
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations
2019-01-01 Tett, Adrian; Huang, Kun D.; Asnicar, Francesco; Fehlner-Peach, Hannah; Pasolli, Edoardo; Karcher, Nicolai; Armanini, Federica; Manghi, Paolo; Bonham, Kevin; Zolfo, Moreno; De Filippis, Francesca; Magnabosco, Cara; Bonneau, Richard; Lusingu, John; Amuasi, John; Reinhard, Karl; Rattei, Thomas; Boulund, Fredrik; Engstrand, Lars; Zink, Albert; Collado, Maria Carmen; Littman, Dan R.; Eibach, Daniel; Ercolini, Danilo; Rota-Stabelli, Omar; Huttenhower, Curtis; Maixner, Frank; Segata, Nicola
Genomic and metagenomic insights into the microbial community of a thermal spring
2019-01-01 Pedron, Renato; Esposito, Alfonso; Bianconi, Irene; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Cristofolini, Mario; Segata, Nicola; Jousson, Olivier
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
2019-01-01 Manara, Serena; Asnicar, Francesco; Beghini, Francesco; Bazzani, Davide; Cumbo, Fabio; Zolfo, Moreno; Nigro, Eleonora; Karcher, Nicolai; Manghi, Paolo; Metzger, Marisa Isabell; Pasolli, Edoardo; Segata, Nicola
Methicillin-resistant Staphylococcus aureus eradication in cystic fibrosis patients: A randomized multicenter study
2019-01-01 Dolce, D.; Neri, S.; Grisotto, L.; Campana, S.; Ravenni, N.; Miselli, F.; Camera, E.; Zavataro, L.; Braggion, C.; Fiscarelli, E. V.; Lucidi, V.; Cariani, L.; Girelli, D.; Faelli, N.; Colombo, C.; Lucanto, C.; Lombardo, M.; Magazzu, G.; Tosco, A.; Raia, V.; Manara, S.; Pasolli, E.; Armanini, F.; Segata, N.; Biggeri, A.; Taccetti, G.
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019-01-01 Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola
Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets
2019-01-01 De Filippis, Francesca; Pasolli, Edoardo; Tett, Adrian; Tarallo, Sonia; Naccarati, Alessio; De Angelis, Maria Grazia; Neviani, Erasmo; Cocolin, Luca; Gobbetti, Marco; Segata, Nicola; Ercolini, Danilo
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
2020-01-01 Pasolli, E.; De Filippis, F.; Mauriello, I. E.; Cumbo, F.; Walsh, A. M.; Leech, J.; Cotter, P. D.; Segata, N.; Ercolini, D.
Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics
2020-01-01 Ghensi, Paolo; Manghi, Paolo; Zolfo, Moreno; Armanini, Federica; Pasolli, Edoardo; Bolzan, Mattia; Bertelle, Alberto; Dell’Acqua, Federico; Dellasega, Ester; Waldner, Romina; Tessarolo, Francesco; Tomasi, Cristiano; Segata, Nicola
Cross-reactivity between tumor MHC class I–restricted antigens and an enterococcal bacteriophage
2020-01-01 Fluckiger, A.; Daillere, R.; Sassi, M.; Sixt, B. S.; Liu, P.; Loos, F.; Richard, C.; Rabu, C.; Alou, M. T.; Goubet, A. -G.; Lemaitre, F.; Ferrere, G.; Derosa, L.; Duong, C. P. M.; Messaoudene, M.; Gagne, A.; Joubert, P.; de Sordi, L.; Debarbieux, L.; Simon, S.; Scarlata, C. -M.; Ayyoub, M.; Palermo, B.; Facciolo, F.; Boidot, R.; Wheeler, R.; Boneca, I. G.; Sztupinszki, Z.; Papp, K.; Csabai, I.; Pasolli, E.; Segata, N.; Lopez-Otin, C.; Szallasi, Z.; Andre, F.; Iebba, V.; Quiniou, V.; Klatzmann, D.; Boukhalil, J.; Khelaifia, S.; Raoult, D.; Albiges, L.; Escudier, B.; Eggermont, A.; Mami-Chouaib, F.; Nistico, P.; Ghiringhelli, F.; Routy, B.; Labarriere, N.; Cattoir, V.; Kroemer, G.; Zitvogel, L.
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
2020-01-01 Asnicar, Francesco; Thomas, Andrew Maltez; Beghini, Francesco; Mengoni, Claudia; Manara, Serena; Manghi, Paolo; Zhu, Qiyun; Bolzan, Mattia; Cumbo, Fabio; May, Uyen; Sanders, Jon G.; Zolfo, Moreno; Kopylova, Evguenia; Pasolli, Edoardo; Knight, Rob; Mirarab, Siavash; Huttenhower, Curtis; Segata, Nicola
Gut Bacteria Composition Drives Primary Resistance to Cancer Immunotherapy in Renal Cell Carcinoma Patients
2020-01-01 Derosa, Lisa; Routy, Bertrand; Fidelle, Marine; Iebba, Valerio; Alla, Laurie; Pasolli, Edoardo; Segata, Nicola; Desnoyer, Aude; Pietrantonio, Filippo; Ferrere, Gladys; Fahrner, Jean-Eudes; Le Chatellier, Emmanuelle; Pons, Nicolas; Galleron, Nathalie; Roume, Hugo; Duong, Connie P M; Mondragón, Laura; Iribarren, Kristina; Bonvalet, Mélodie; Terrisse, Safae; Rauber, Conrad; Goubet, Anne-Gaëlle; Daillère, Romain; Lemaitre, Fabien; Reni, Anna; Casu, Beatrice; Alou, Maryam Tidjani; Alves Costa Silva, Carolina; Raoult, Didier; Fizazi, Karim; Escudier, Bernard; Kroemer, Guido; Albiges, Laurence; Zitvogel, Laurence
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
2020-01-01 Karcher, Nicolai; Pasolli, Edoardo; Asnicar, Francesco; Huang, Kun D.; Tett, Adrian; Manara, Serena; Armanini, Federica; Bain, Debbie; Duncan, Sylvia H.; Louis, Petra; Zolfo, Moreno; Manghi, Paolo; Valles-Colomer, Mireia; Raffaetà, Roberta; Rota-Stabelli, Omar; Collado, Maria Carmen; Zeller, Georg; Falush, Daniel; Maixner, Frank; Walker, Alan W.; Huttenhower, Curtis; Segata, Nicola
Reporting guidelines for human microbiome research: the STORMS checklist
2021-01-01 Mirzayi, Chloe; Renson, Audrey; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z; Macintyre, David A; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A; Bushman, Frederic; Casero, David; Clarke, Gerard; Collado, Maria Carmen; Cotter, Paul D; Cryan, John F; Demmer, Ryan T; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S; Fettweis, Jennifer; Finn, Robert D; Fodor, Anthony A; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S; Langille, Morgan; Lindsay, Brianna; Mcgovern, Dermot; Mchardy, Alice C; Mcweeney, Shannon; Mueller, Noel T; Nezi, Luigi; Olm, Matthew; Palm, Noah; Pasolli, Edoardo; Raes, Jeroen; Redinbo, Matthew R; Rühlemann, Malte; Balfour Sartor, R; Schloss, Patrick D; Schriml, Lynn; Segal, Eran; Shardell, Michelle; Sharpton, Thomas; Smirnova, Ekaterina; Sokol, Harry; Sonnenburg, Justin L; Srinivasan, Sujatha; Thingholm, Louise B; Turnbaugh, Peter J; Upadhyay, Vaibhav; Walls, Ramona L; Wilmes, Paul; Yamada, Takuji; Zeller, Georg; Zhang, Mingyu; Zhao, Ni; Zhao, Liping; Bao, Wenjun; Culhane, Aedin; Devanarayan, Viswanath; Dopazo, Joaquin; Fan, Xiaohui; Fischer, Matthias; Jones, Wendell; Kusko, Rebecca; Mason, Christopher E; Mercer, Tim R; Sansone, Susanna-Assunta; Scherer, Andreas; Shi, Leming; Thakkar, Shraddha; Tong, Weida; Wolfinger, Russ; Hunter, Christopher; Segata, Nicola; Huttenhower, Curtis; Dowd, Jennifer B; Jones, Heidi E; Waldron, Levi
Prevotella diversity, niches and interactions with the human host
2021-01-01 Tett, Adrian; Pasolli, Edoardo; Masetti, Giulia; Ercolini, Danilo; Segata, Nicola
Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment
2021-01-01 Terrisse, Safae; Derosa, Lisa; Iebba, Valerio; Ghiringhelli, François; Vaz-Luis, Ines; Kroemer, Guido; Fidelle, Marine; Christodoulidis, Stergios; Segata, Nicola; Thomas, Andrew Maltez; Martin, Anne-Laure; Sirven, Aude; Everhard, Sibille; Aprahamian, Fanny; Nirmalathasan, Nitharsshini; Aarnoutse, Romy; Smidt, Marjolein; Ziemons, Janine; Caldas, Carlos; Loibl, Sibylle; Denkert, Carsten; Durand, Sylvere; Iglesias, Claudia; Pietrantonio, Filippo; Routy, Bertrand; André, Fabrice; Pasolli, Edoardo; Delaloge, Suzette; Zitvogel, Laurence
Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization
2021-01-01 Uzan-Yulzari, Atara; Turta, Olli; Belogolovski, Anna; Ziv, Oren; Kunz, Christina; Perschbacher, Sarah; Neuman, Hadar; Pasolli, Edoardo; Oz, Aia; Ben-Amram, Hila; Kumar, Himanshu; Ollila, Helena; Kaljonen, Anne; Isolauri, Erika; Salminen, Seppo; Lagström, Hanna; Segata, Nicola; Sharon, Itai; Louzoun, Yoram; Ensenauer, Regina; Rautava, Samuli; Koren, Omry
Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals
2022-01-01 Tarallo, Sonia; Ferrero, Giulio; De Filippis, Francesca; Francavilla, Antonio; Pasolli, Edoardo; Panero, Valentina; Cordero, Francesca; Segata, Nicola; Grioni, Sara; Pensa, Ruggero Gaetano; Pardini, Barbara; Ercolini, Danilo; Naccarati, Alessio
The person-to-person transmission landscape of the gut and oral microbiomes
2023-01-01 Valles-Colomer, Mireia; Blanco-Míguez, Aitor; Manghi, Paolo; Asnicar, Francesco; Dubois, Leonard; Golzato, Davide; Armanini, Federica; Cumbo, Fabio; Huang, Kun D; Manara, Serena; Masetti, Giulia; Pinto, Federica; Piperni, Elisa; Punčochář, Michal; Ricci, Liviana; Zolfo, Moreno; Farrant, Olivia; Goncalves, Adriana; Selma-Royo, Marta; Binetti, Ana G; Becerra, Jimmy E; Han, Bei; Lusingu, John; Amuasi, John; Amoroso, Loredana; Visconti, Alessia; Steves, Claire M; Falchi, Mario; Filosi, Michele; Tett, Adrian; Last, Anna; Xu, Qian; Qin, Nan; Qin, Huanlong; May, Jürgen; Eibach, Daniel; Corrias, Maria Valeria; Ponzoni, Mirco; Pasolli, Edoardo; Spector, Tim D; Domenici, Enrico; Collado, Maria Carmen; Segata, Nicola
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