Segata, Nicola
Segata, Nicola
CIBIO (29/10/12-)
A framework for human microbiome research.
2012-01-01 Barbara A., Methé; Karen E., Nelson; Mihai, Pop; Heather H., Creasy; Michelle G., Giglio; Curtis, Huttenhower; Dirk, Gevers; Joseph F., Petrosino; Sahar, Abubucker; Jonathan H., Badger; Asif T., Chinwalla; Ashlee M., Earl; Michael G., Fitzgerald; Robert S., Fulton; Kymberlie Hallsworth, Pepin; Elizabeth A., Lobos; Ramana, Madupu; Vincent, Magrini; John C., Martin; Makedonka, Mitreva; Donna M., Muzny; Erica J., Sodergren; James, Versalovic; Aye M., Wollam; Kim C., Worley; Jennifer R., Wortman; Sarah K., Young; Qiandong, Zeng; Kjersti M., Aagaard; Olukemi O., Abolude; Emma Allen, Vercoe; Eric J., Alm; Lucia, Alvarado; Gary L., Andersen; Scott, Anderson; Elizabeth, Appelbaum; Harindra M., Arachchi; Gary, Armitage; Cesar A., Arze; Tulin, Ayvaz; Carl C., Baker; Lisa, Begg; Tsegahiwot, Belachew; Veena, Bhonagiri; Monika, Bihan; Martin J., Blaser; Toby, Bloom; Vivien, Bonazzi; J., Paul Brooks; Gregory A., Buck; Christian J., Buhay; Dana A., Busam; Joseph L., Campbell; Shane R., Canon; Brandi L., Cantarel; Patrick S., Chain; I. Min A., Chen; Lei, Chen; Shaila, Chhibba; Ken, Chu; Dawn M., Ciulla; Jose C., Clemente; Sandra W., Clifton; Sean, Conlan; Jonathan, Crabtree; Mary A., Cutting; Noam J., Davidovics; Catherine C., Davis; Todd Z., Desantis; Carolyn, Deal; Kimberley D., Delehaunty; Floyd E., Dewhirst; Elena, Deych; Yan, Ding; David J., Dooling; Shannon P., Dugan; Michael Dunne, W. m.; J., R.; A., Scott Durkin; Robert C., Edgar; Rachel L., Erlich; Candace N., Farmer; Ruth M., Farrell; Karoline, Faust; Michael, Feldgarden; Victor M., Felix; Sheila, Fisher; Anthony A., Fodor; Larry, Forney; Leslie, Foster; Valentina Di, Francesco; Jonathan, Friedman; Dennis C., Friedrich; Catrina C., Fronick; Lucinda L., Fulton; Hongyu, Gao; Nathalia, Garcia; Georgia, Giannoukos; Christina, Giblin; Maria Y., Giovanni; Jonathan M., Goldberg; Johannes, Goll; Antonio, Gonzalez; Allison, Griggs; Sharvari, Gujja; Brian J., Haas; Holli A., Hamilton; Emily L., Harris; Theresa A., Hepburn; Brandi, Herter; Diane E., Hoffmann; Michael E., Holder; Clinton, Howarth; Katherine H., Huang; Susan M., Huse; Jacques, Izard; Janet K., Jansson; Huaiyang, Jiang; Catherine, Jordan; Vandita, Joshi; James A., Katancik; Wendy A., Keitel; Scott T., Kelley; Cristyn, Kells; Susan Kinder, Haake; Nicholas B., King; Rob, Knight; Dan, Knights; Heidi H., Kong; Omry, Koren; Sergey, Koren; Karthik C., Kota; Christie L., Kovar; Nikos C., Kyrpides; Patricio S., La Rosa; Sandra L., Lee; Katherine P., Lemon; Niall, Lennon; Cecil M., Lewis; Lora, Lewis; Ruth E., Ley; Kelvin, Li; Konstantinos, Liolios; Bo, Liu; Yue, Liu; Chien Chi, Lo; Catherine A., Lozupone; R., Dwayne Lunsford; Tessa, Madden; Anup A., Mahurkar; Peter J., Mannon; Elaine R., Mardis; Victor M., Markowitz; Konstantinos, Mavrommatis; Jamison M., Mccorrison; Daniel, Mcdonald; Jean, Mcewen; Amy L., Mcguire; Pamela, Mcinnes; Teena, Mehta; Kathie A., Mihindukulasuriya; Jason R., Miller; Patrick J., Minx; Irene, Newsham; Chad, Nusbaum; Michelle, O'Laughlin; Joshua, Orvis; Ioanna, Pagani; Krishna, Palaniappan; Shital M., Patel; Matthew, Pearson; Jane, Peterson; Mircea, Podar; Craig, Pohl; Katherine S., Pollard; Margaret E., Priest; Lita M., Proctor; Xiang, Qin; Jeroen, Raes; Jacques, Ravel; Jeffrey G., Reid; Mina, Rho; Rosamond, Rhodes; Kevin P., Riehle; Maria C., Rivera; Beltran Rodriguez, Mueller; Yu Hui, Rogers; Matthew C., Ross; Carsten, Russ; Ravi K., Sanka; Pamela, Sankar; J., Fah Sathirapongsasuti; Jeffery A., Schloss; Patrick D., Schloss; Thomas M., Schmidt; Matthew, Scholz; Lynn, Schriml; Alyxandria M., Schubert; Segata, Nicola; Julia A., Segre; William D., Shannon; Richard R., Sharp; Thomas J., Sharpton; Narmada, Shenoy; Nihar U., Sheth; Gina A., Simone; Indresh, Singh; Chris S., Smillie; Jack D., Sobel; Daniel D., Sommer; Paul, Spicer; Granger G., Sutton; Sean M., Sykes; Diana G., Tabbaa; Mathangi, Thiagarajan; Chad M., Tomlinson; Manolito, Torralba; Todd J., Treangen; Rebecca M., Truty; Tatiana A., Vishnivetskaya; Jason, Walker; Lu, Wang; Zhengyuan, Wang; Doyle V., Ward; Wesley, Warren; Mark A., Watson; Christopher, Wellington; Kris A., Wetterstrand; James R., White; Katarzyna Wilczek, Boney; Yuan Qing, Wu; Kristine M., Wylie; Todd, Wylie; Chandri, Yandava; Liang, Ye; Yuzhen, Ye; Shibu, Yooseph; Bonnie P., Youmans; Lan, Zhang; Yanjiao, Zhou; Yiming, Zhu; Laurie, Zoloth; Jeremy D., Zucker; Bruce W., Birren; Richard A., Gibbs; Sarah K., Highlander; George M., Weinstock; Richard K., Wilson; Owen, White
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.
2013-01-01 O., Koren; D., Knights; A., Gonzalez; L., Waldron; Segata, Nicola; R., Knight; C., Huttenhower; Re, Ley
A Kalman filter based background updating algorithm robust to sharp illumination changes
2005-01-01 Messelodi, Stefano; C. M., Modena; Segata, Nicola; Zannin, Michele
A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy.
2012-01-01 K., Aagaard; K., Riehle; J., Ma; Segata, Nicola; T., Mistretta; C., Coarfa; S., Raza; S., Rosenbaum; I. V., Den; A., Milosavljevic; D., Gevers; C., Huttenhower; J., Petrosino; J., Versalovic
A Scalable Noise Reduction Technique for Large Case-Based Systems
2009-01-01 Segata, Nicola; Blanzieri, Enrico; P., Cunningham
Accessible, curated metagenomic data through ExperimentHub
2017-01-01 Pasolli, Edoardo; Schiffer, Lucas Michael; Manghi, Paolo; Renson, Audrey; Obenchain, Valerie; Truong, Duy Tin; Beghini, Francesco; Malik, Faizan; Ramos, Marcel; Dowd, Jennifer B; Huttenhower, Curtis; Morgan, Martin; Segata, Nicola; Waldron, Levi
Altered fecal small RNA profiles in colorectal cancer reflect gut microbiome composition in stool samples
2019-01-01 Tarallo, S.; Ferrero, G.; Gallo, G.; Francavilla, A.; Clerico, G.; Luc, A. R.; Manghi, P.; Thomas, A. M.; Vineis, P.; Segata, N.; Pardini, B.; Naccarati, A.; Cordero, F.
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
2020-01-01 Karcher, Nicolai; Pasolli, Edoardo; Asnicar, Francesco; Huang, Kun D.; Tett, Adrian; Manara, Serena; Armanini, Federica; Bain, Debbie; Duncan, Sylvia H.; Louis, Petra; Zolfo, Moreno; Manghi, Paolo; Valles-Colomer, Mireia; Raffaetà, Roberta; Rota-Stabelli, Omar; Collado, Maria Carmen; Zeller, Georg; Falush, Daniel; Maixner, Frank; Walker, Alan W.; Huttenhower, Curtis; Segata, Nicola
At the forefront of the sequencing revolution - Notes from the RNGS19 conference
2019-01-01 Wuyts, Sander; Segata, N.
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
2015-01-01 Milani, Christian; Andrea Lugli, Gabriele; Duranti, Sabrina; Turroni, Francesca; Mancabelli, Leonardo; Ferrario, Chiara; Mangifesta, Marta; Hevia, Arancha; Viappiani, Alice; Scholz, Matthias Uwe; Arioli, Stefania; Sanchez, Borja; Lane, Jonathan; Ward, Doyle V; Hickey, Rita; Mora, Diego; Segata, Nicola; Margolles, Abelardo; van Sinderen, Douwe; Ventura, Marco
BioBakery: A meta'omic analysis environment
2018-01-01 Mciver, Lauren J.; Abu-Ali, Galeb; Franzosa, Eric A.; Schwager, Randall; Morgan, Xochitl C.; Waldron, Levi; Segata, Nicola; Huttenhower, Curtis
Biodiversity and functional genomics in the human microbiome.
2013-01-01 Morgan, X. C.; Segata, Nicola; C., Huttenhower
Blue poo: Impact of gut transit time on the gut microbiome using a novel marker
2021-01-01 Asnicar, F.; Leeming, E. R.; Dimidi, E.; Mazidi, M.; Franks, P. W.; Al Khatib, H.; Valdes, A. M.; Davies, R.; Bakker, E.; Francis, L.; Chan, A.; Gibson, R.; Hadjigeorgiou, G.; Wolf, J.; Spector, T. D.; Segata, N.; Berry, S. E.
Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale
2017-01-01 Kissling, W. Daniel; Ahumada, Jorge A.; Bowser, Anne; Fernandez, Miguel; Fernã¡ndez, Nã©stor; Garcãa, Enrique Alonso; Guralnick, Robert P.; Isaac, Nick J. B.; Kelling, Steve; Los, Wouter; Mcrae, Louise; Mihoub, Jean Baptiste; Obst, Matthias; Santamaria, Monica; Skidmore, Andrew K.; Williams, Kristen J.; Agosti, Donat; Amariles, Daniel; Arvanitidis, Christos; Bastin, Lucy; De Leo, Francesca; Egloff, Willi; Elith, Jane; Hobern, Donald; Martin, David; Pereira, Henrique M.; Pesole, Graziano; Peterseil, Johannes; Saarenmaa, Hannu; Schigel, Dmitry; Schmeller, Dirk S.; Segata, Nicola; Turak, Eren; Uhlir, Paul F.; Wee, Brian; Hardisty, Alex R.
Characterization of 17 strains belonging to the Mycobacterium simiae complex and description of Mycobacterium paraense sp. nov.
2015-01-01 Fusco da Costa, Ar; Fedrizzi, Tarcisio; Lopes, Ml; Pecorari, M; Oliveira da Costa, Wl; Giacobazzi, Elisabetta; da Costa Bahia, Jr; De Sanctis, Veronica; Batista Lima, Kv; Bertorelli, Roberto; Grottola, A; Fabio, A; Mariottini, A; Ferretti, P; di Leva, F; Fregni Serpini, G; Tagliacuzzi, S; Rumpianesi, F; Jousson, Olivier; Segata, Nicola; Tortoli, E.
Circulating inflammatory proteins associate with response to immune checkpoint inhibition therapy in patients with advanced melanoma
2022-01-01 Rossi, Niccolò; Lee, Karla A; Bermudez, Maria V; Visconti, Alessia; Thomas, Andrew Maltez; Bolte, Laura A; Björk, Johannes R; de Ruijter, Laura Kist; Newton-Bishop, Julia; Harland, Mark; Shaw, Heather M; Harries, Mark; Sacco, Joseph; Board, Ruth; Lorigan, Paul; de Vries, Elisabeth G E; Segata, Nicola; Taams, Leonie; Papa, Sophie; Spector, Tim D; Nathan, Paul; Weersma, Rinse K; Hospers, Geke A P; Fehrmann, Rudolf S N; Bataille, Veronique; Falchi, Mario
Clinical populations of Pseudomonas aeruginosa isolated from acute infections show a high virulence range partially correlated with population structure and virulence gene expression
2012-01-01 Janjua, Hussnain Ahmed; Segata, Nicola; Bernabò, Paola; Tamburini, Sabrina; Ellen, Albert; Jousson, Olivier
Closely related Lak megaphages replicate in the microbiomes of diverse animals
2021-01-01 Crisci, Marco A; Chen, Lin-Xing; Devoto, Audra E; Borges, Adair L; Bordin, Nicola; Sachdeva, Rohan; Tett, Adrian; Sharrar, Allison M; Segata, Nicola; Debenedetti, Francesco; Bailey, Mick; Burt, Rachel; Wood, Rhiannon M; Rowden, Lewis J; Corsini, Paula M; van Winden, Steven; Holmes, Mark A; Lei, Shufei; Banfield, Jillian F; Santini, Joanne M
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity
2020-01-01 Wylensek, David; Hitch, Thomas C A; Riedel, Thomas; Afrizal, Afrizal; Kumar, Neeraj; Wortmann, Esther; Liu, Tianzhe; Devendran, Saravanan; Lesker, Till R; Hernández, Sara B; Heine, Viktoria; Buhl, Eva M; M D'Agostino, Paul; Cumbo, Fabio; Fischöder, Thomas; Wyschkon, Marzena; Looft, Torey; Parreira, Valeria R; Abt, Birte; Doden, Heidi L; Ly, Lindsey; Alves, João M P; Reichlin, Markus; Flisikowski, Krzysztof; Suarez, Laura Navarro; Neumann, Anthony P; Suen, Garret; de Wouters, Tomas; Rohn, Sascha; Lagkouvardos, Ilias; Allen-Vercoe, Emma; Spröer, Cathrin; Bunk, Boyke; Taverne-Thiele, Anja J; Giesbers, Marcel; Wells, Jerry M; Neuhaus, Klaus; Schnieke, Angelika; Cava, Felipe; Segata, Nicola; Elling, Lothar; Strowig, Till; Ridlon, Jason M; Gulder, Tobias A M; Overmann, Jörg; Clavel, Thomas
Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines
2021-01-01 Tomasi, Michele; Dalsass, Mattia; Beghini, Francesco; Zanella, Ilaria; Caproni, Elena; Fantappiè, Laura; Gagliardi, Assunta; Irene, Carmela; König, Enrico; Frattini, Luca; Masetti, Giulia; Isaac, Samine Jessica; Armanini, Federica; Cumbo, Fabio; Blanco-Míguez, Aitor; Grandi, Alberto; Segata, Nicola; Grandi, Guido