Asnicar, Francesco
Asnicar, Francesco
CIBIO (29/10/12-)
1244 POPULATION-LEVEL IMPACT OF A METABOLICALLY- AND MICROBIALLYINFORMED DIET ON WEIGHT CHANGE AND OBESITY-RELATED COMPLICATIONS
2023-01-01 Kim, Hanseul; Leeming, Emily; Merino, Jordi; Kim, Daniel; Drew, David A.; Asnicar, Francesco; Linenberg, Inbar; Bermingham, Kate; Francis, Lucy; Wolf, Jonathan; Spector, Tim; Segata, Nicola; Huttenhower, Curtis; Berry, Sarah; Nguyen, Long H.; Chan, Andrew T.
A Computing System for Discovering Causal Relationships among Human Genes to Improve Drug Repositioning
2020-01-01 Blanzieri, E.; Tebaldi, T.; Cavecchia, V.; Asnicar, F.; Masera, L.; Tome, G.; Nigro, E.; Colasurdo, E.; Ciciani, M.; Mazzoni, C.; Pilati, S.
A Fecal Metabolite Signature of Impaired Fasting Glucose: Results From Two Independent Population-Based Cohorts
2023-01-01 Nogal, Ana; Tettamanzi, Francesca; Dong, Qiuling; Louca, Panayiotis; Visconti, Alessia; Christiansen, Colette; Breuninger, Taylor; Linseisen, Jakob; Grallert, Harald; Wawro, Nina; Asnicar, Francesco; Wong, Kari; Baleanu, Andrei-Florin; Michelotti, Gregory A.; Segata, Nicola; Falchi, Mario; Peters, Annette; Franks, Paul W.; Bagnardi, Vincenzo; Spector, Tim D.; Bell, Jordana T.; Gieger, Christian; Valdes, Ana M.; Menni, Cristina
A phylogenetic framework for large-scale analysis of microbial communities
2019-01-01 Asnicar, Francesco
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
2020-01-01 Karcher, Nicolai; Pasolli, Edoardo; Asnicar, Francesco; Huang, Kun D.; Tett, Adrian; Manara, Serena; Armanini, Federica; Bain, Debbie; Duncan, Sylvia H.; Louis, Petra; Zolfo, Moreno; Manghi, Paolo; Valles-Colomer, Mireia; Raffaetà, Roberta; Rota-Stabelli, Omar; Collado, Maria Carmen; Zeller, Georg; Falush, Daniel; Maixner, Frank; Walker, Alan W.; Huttenhower, Curtis; Segata, Nicola
Automated identification of sequence-tailored Cas9 proteins using massive metagenomic data
2022-01-01 Ciciani, Matteo; Demozzi, Michele; Pedrazzoli, Eleonora; Visentin, Elisabetta; Pezzè, Laura; Signorini, Lorenzo Federico; Blanco-Miguez, Aitor; Zolfo, Moreno; Asnicar, Francesco; Casini, Antonio; Cereseto, Anna; Segata, Nicola
Blue poo: Impact of gut transit time on the gut microbiome using a novel marker
2021-01-01 Asnicar, F.; Leeming, E. R.; Dimidi, E.; Mazidi, M.; Franks, P. W.; Al Khatib, H.; Valdes, A. M.; Davies, R.; Bakker, E.; Francis, L.; Chan, A.; Gibson, R.; Hadjigeorgiou, G.; Wolf, J.; Spector, T. D.; Segata, N.; Berry, S. E.
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
2015-01-01 Asnicar, Francesco; Weingart, George; Tickle, Timothy L.; Huttenhower, Curtis; Segata, Nicola
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
2022-01-01 Lee, Karla A; Thomas, Andrew Maltez; Bolte, Laura A; Björk, Johannes R; de Ruijter, Laura Kist; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Leeming, Emily R; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M; Tamburini, Sabrina; Valpione, Sara; Vijay, Amrita; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G E; Nathan, Paul; Fehrmann, Rudolf S N; Bataille, Véronique; Hospers, Geke A P; Spector, Tim D; Weersma, Rinse K; Segata, Nicola
Detecting contamination in viromes using ViromeQC
2019-01-01 Zolfo, Moreno; Pinto, Federica; Asnicar, Francesco; Manghi, Paolo; Tett, Adrian; Bushman, Frederic D; Segata, Nicola
Diet and gut microbial associations in irritable bowel syndrome according to disease subtype
2023-01-01 Wang, Yiqing; Ma, Wenjie; Mehta, Raaj; Nguyen, Long H.; Song, Mingyang; Drew, David A.; Asnicar, Francesco; Huttenhower, Curtis; Segata, Nicola; Wolf, Jonathan; Spector, Tim; Berry, Sarah; Staller, Kyle; Chan, Andrew T.
Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing
2015-01-01 Asnicar, Francesco; Erculiani, Luca; Galante, Francesca; Gallo, Caterina; Masera, Luca; Morettin, Paolo; Sella, Nadir; Semeniuta, Stanislau; Tolio, Thomas; Malacarne, Giulia; Engelen, Kristof; Argentini, Andrea; Cavecchia, Valter; Moser, Claudio; Blanzieri, Enrico
Discovering causal relationships in grapevine expression data to expand gene networks. A case study: four networks related to climate change
2018-01-01 Malacarne, Giulia; Pilati, Stefania; Valentini, Samuel; Asnicar, Francesco; Moretto, Marco; Sonego, Paolo; Masera, Luca; Cavecchia, Valter; Blanzieri, Enrico; Moser, Claudio
Draft genome sequence of a representative strain of the Catenibacterium genus isolated from human feces
2023-01-01 Ricci, Liviana; Selma-Royo, Marta; Golzato, Davide; Nabinejad, Amir; Servais, Charlotte; Armanini, Federica; Asnicar, Francesco; Pinto, Federica; Tamburini, Sabrina; Segata, Nicola
Draft Genome Sequence of Neopoerus faecalis gen. nov., sp. nov., an Oscillospiraceae Strain Isolated from Human Feces
2023-01-01 Selma-Royo, M; Ricci, L; Golzato, D; Servais, C; Armanini, F; Asnicar, F; Pinto, F; Segata, N
Draft genome sequence of the planktic cyanobacterium Tychonema bourrellyi, isolated from Alpine lentic freshwater
2017-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Draft genome sequences of novel Pseudomonas, Flavobacterium, and Sediminibacterium species strains from a freshwater ecosystem
2018-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth
2020-01-01 Zagato, Elena; Pozzi, Chiara; Bertocchi, Alice; Schioppa, Tiziana; Saccheri, Fabiana; Guglietta, Silvia; Fosso, Bruno; Melocchi, Laura; Nizzoli, Giulia; Troisi, Jacopo; Marzano, Marinella; Oresta, Bianca; Spadoni, Ilaria; Atarashi, Koji; Carloni, Sara; Arioli, Stefania; Fornasa, Giulia; Asnicar, Francesco; Segata, Nicola; Guglielmetti, Simone; Honda, Kenya; Pesole, Graziano; Vermi, William; Penna, Giuseppe; Rescigno, Maria
Exploring the relationship between social jetlag with gut microbial composition, diet and cardiometabolic health, in the ZOE PREDICT 1 cohort
2023-01-01 Bermingham, Kate M; Stensrud, Sophie; Asnicar, Francesco; Valdes, Ana M; Franks, Paul W; Wolf, Jonathan; Hadjigeorgiou, George; Davies, Richard; Spector, Tim D; Segata, Nicola; Berry, Sarah E; Hall, Wendy L
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
2023-01-01 Blanco-Míguez, Aitor; Beghini, Francesco; Cumbo, Fabio; Mciver, Lauren J.; Thompson, Kelsey N.; Zolfo, Moreno; Manghi, Paolo; Dubois, Leonard; Huang, Kun D.; Thomas, Andrew Maltez; Nickols, William A.; Piccinno, Gianmarco; Piperni, Elisa; Punčochář, Michal; Valles-Colomer, Mireia; Tett, Adrian; Giordano, Francesca; Davies, Richard; Wolf, Jonathan; Berry, Sarah E.; Spector, Tim D.; Franzosa, Eric A.; Pasolli, Edoardo; Asnicar, Francesco; Huttenhower, Curtis; Segata, Nicola