Tett, Adrian James
Tett, Adrian James
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
2020-01-01 Karcher, Nicolai; Pasolli, Edoardo; Asnicar, Francesco; Huang, Kun D.; Tett, Adrian; Manara, Serena; Armanini, Federica; Bain, Debbie; Duncan, Sylvia H.; Louis, Petra; Zolfo, Moreno; Manghi, Paolo; Valles-Colomer, Mireia; Raffaetà, Roberta; Rota-Stabelli, Omar; Collado, Maria Carmen; Zeller, Georg; Falush, Daniel; Maixner, Frank; Walker, Alan W.; Huttenhower, Curtis; Segata, Nicola
Closely related Lak megaphages replicate in the microbiomes of diverse animals
2021-01-01 Crisci, Marco A; Chen, Lin-Xing; Devoto, Audra E; Borges, Adair L; Bordin, Nicola; Sachdeva, Rohan; Tett, Adrian; Sharrar, Allison M; Segata, Nicola; Debenedetti, Francesco; Bailey, Mick; Burt, Rachel; Wood, Rhiannon M; Rowden, Lewis J; Corsini, Paula M; van Winden, Steven; Holmes, Mark A; Lei, Shufei; Banfield, Jillian F; Santini, Joanne M
Consumer Safety Considerations of Skin and Oral Microbiome Perturbation
2019-01-01 Mcbain, A. J.; O'Neill, C. A.; Amezquita, A.; Price, L. J.; Faust, K.; Tett, A.; Segata, N.; Swann, J. R.; Smith, A. M.; Murphy, B.; Hoptroff, M.; Pattison, James Geoffrey Clifford; Reddy, Y.; Dasgupta, A.; Ross, T.; Chapple, I. L.; Wade, W. G.; Fernandez-Piquer, J.
Detecting contamination in viromes using ViromeQC
2019-01-01 Zolfo, Moreno; Pinto, Federica; Asnicar, Francesco; Manghi, Paolo; Tett, Adrian; Bushman, Frederic D; Segata, Nicola
Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets
2019-01-01 De Filippis, Francesca; Pasolli, Edoardo; Tett, Adrian; Tarallo, Sonia; Naccarati, Alessio; De Angelis, Maria Grazia; Neviani, Erasmo; Cocolin, Luca; Gobbetti, Marco; Segata, Nicola; Ercolini, Danilo
Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates
2019-01-01 Fehlner-Peach, Hannah; Magnabosco, Cara; Raghavan, Varsha; Scher, Jose U.; Tett, Adrian; Cox, Laura M.; Gottsegen, Claire; Watters, Aaron; Wiltshire-Gordon, John D.; Segata, Nicola; Bonneau, Richard; Littman, Dan R.
Draft genome sequence of the planktic cyanobacterium Tychonema bourrellyi, isolated from Alpine lentic freshwater
2017-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Draft genome sequences of novel Pseudomonas, Flavobacterium, and Sediminibacterium species strains from a freshwater ecosystem
2018-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Experimental metagenomics and ribosomal profiling of the human skin microbiome
2017-01-01 Ferretti, Pamela; Farina, Stefania; Cristofolini, Mario; Girolomoni, Giampiero; Tett, Adrian James; Segata, Nicola
Exploring Vertical Transmission of Bifidobacteria from Mother to Child
2015-01-01 Milani, Christian; Mancabelli, Leonardo; Lugli, Gabriele Andrea; Duranti, Sabrina; Turroni, Francesca; Ferrario, Chiara; Mangifesta, Marta; Viappiani, Alice; Ferretti, Pamela; Gorfer, Valentina; Tett, Adrian James; Segata, Nicola; van Sinderen, Douwe; Ventura, Marco
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
2023-01-01 Blanco-Míguez, Aitor; Beghini, Francesco; Cumbo, Fabio; Mciver, Lauren J.; Thompson, Kelsey N.; Zolfo, Moreno; Manghi, Paolo; Dubois, Leonard; Huang, Kun D.; Thomas, Andrew Maltez; Nickols, William A.; Piccinno, Gianmarco; Piperni, Elisa; Punčochář, Michal; Valles-Colomer, Mireia; Tett, Adrian; Giordano, Francesca; Davies, Richard; Wolf, Jonathan; Berry, Sarah E.; Spector, Tim D.; Franzosa, Eric A.; Pasolli, Edoardo; Asnicar, Francesco; Huttenhower, Curtis; Segata, Nicola
Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions
2023-01-01 Blanco-Míguez, Aitor; Gálvez, Eric J. C.; Pasolli, Edoardo; De Filippis, Francesca; Amend, Lena; Huang, Kun D.; Manghi, Paolo; Lesker, Till-Robin; Riedel, Thomas; Cova, Linda; Punčochář, Michal; Thomas, Andrew Maltez; Valles-Colomer, Mireia; Schober, Isabel; Hitch, Thomas C. A.; Clavel, Thomas; Berry, Sarah E.; Davies, Richard; Wolf, Jonathan; Spector, Tim D.; Overmann, Jörg; Tett, Adrian; Ercolini, Danilo; Segata, Nicola; Strowig, Till
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019-01-01 Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola
Genomic and metagenomic insights into the microbial community of a thermal spring
2019-01-01 Pedron, Renato; Esposito, Alfonso; Bianconi, Irene; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Cristofolini, Mario; Segata, Nicola; Jousson, Olivier
Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
2021-01-01 Maixner, Frank; Sarhan, Mohamed S; Huang, Kun D; Tett, Adrian; Schoenafinger, Alexander; Zingale, Stefania; Blanco-Míguez, Aitor; Manghi, Paolo; Cemper-Kiesslich, Jan; Rosendahl, Wilfried; Kusebauch, Ulrike; Morrone, Seamus R; Hoopmann, Michael R; Rota-Stabelli, Omar; Rattei, Thomas; Moritz, Robert L; Oeggl, Klaus; Segata, Nicola; Zink, Albert; Reschreiter, Hans; Kowarik, Kerstin
Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter
2021-01-01 Granehäll, Lena; Huang, Kun D.; Tett, Adrian; Manghi, Paolo; Paladin, Alice; O’Sullivan, Niall; Rota-Stabelli, Omar; Segata, Nicola; Zink, Albert; Maixner, Frank
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
2019-01-01 Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M.; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, João Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola
Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
2016-01-01 Ward, Doyle V; Scholz, Matthias Uwe; Zolfo, Moreno; Taft, Diana H.; Schibler, Kurt R.; Tett, Adrian James; Segata, Nicola; Morrow, Ardythe L.
MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
2017-01-01 Zolfo, Moreno; Tett, Adrian James; Jousson, Olivier; Donati, Claudio; Segata, Nicola
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
2015-01-01 Truong, Duy Tin; Franzosa, Eric A; Tickle, Timothy L; Scholz, Matthias Uwe; Weingart, George; Pasolli, Edoardo; Tett, Adrian James; Huttenhower, Curtis; Segata, Nicola