Armanini, Federica
Armanini, Federica
CIBIO (29/10/12-)
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
2020-01-01 Karcher, Nicolai; Pasolli, Edoardo; Asnicar, Francesco; Huang, Kun D.; Tett, Adrian; Manara, Serena; Armanini, Federica; Bain, Debbie; Duncan, Sylvia H.; Louis, Petra; Zolfo, Moreno; Manghi, Paolo; Valles-Colomer, Mireia; Raffaetà, Roberta; Rota-Stabelli, Omar; Collado, Maria Carmen; Zeller, Georg; Falush, Daniel; Maixner, Frank; Walker, Alan W.; Huttenhower, Curtis; Segata, Nicola
Class-wide genomic tendency throughout specific extremes in black fungi
2024-01-01 Coleine, Claudia; Kurbessoian, Tania; Calia, Giulia; Delgado-Baquerizo, Manuel; Cestaro, Alessandro; Pindo, Massimo; Armanini, Federica; Asnicar, Francesco; Isola, Daniela; Segata, Nicola; Donati, Claudio; Stajich, Jason E.; de Hoog, Sybren; Selbmann, Laura
Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines
2021-01-01 Tomasi, Michele; Dalsass, Mattia; Beghini, Francesco; Zanella, Ilaria; Caproni, Elena; Fantappiè, Laura; Gagliardi, Assunta; Irene, Carmela; König, Enrico; Frattini, Luca; Masetti, Giulia; Isaac, Samine Jessica; Armanini, Federica; Cumbo, Fabio; Blanco-Míguez, Aitor; Grandi, Alberto; Segata, Nicola; Grandi, Guido
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
2022-01-01 Lee, Karla A; Thomas, Andrew Maltez; Bolte, Laura A; Björk, Johannes R; de Ruijter, Laura Kist; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Leeming, Emily R; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M; Tamburini, Sabrina; Valpione, Sara; Vijay, Amrita; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G E; Nathan, Paul; Fehrmann, Rudolf S N; Bataille, Véronique; Hospers, Geke A P; Spector, Tim D; Weersma, Rinse K; Segata, Nicola
Draft genome sequence of a representative strain of the Catenibacterium genus isolated from human feces
2023-01-01 Ricci, Liviana; Selma-Royo, Marta; Golzato, Davide; Nabinejad, Amir; Servais, Charlotte; Armanini, Federica; Asnicar, Francesco; Pinto, Federica; Tamburini, Sabrina; Segata, Nicola
Draft Genome Sequence of Neopoerus faecalis gen. nov., sp. nov., an Oscillospiraceae Strain Isolated from Human Feces
2023-01-01 Selma-Royo, M; Ricci, L; Golzato, D; Servais, C; Armanini, F; Asnicar, F; Pinto, F; Segata, N
Draft genome sequence of the planktic cyanobacterium Tychonema bourrellyi, isolated from Alpine lentic freshwater
2017-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Draft genome sequences of novel Pseudomonas, Flavobacterium, and Sediminibacterium species strains from a freshwater ecosystem
2018-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019-01-01 Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola
Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma
2020-01-01 Ianiro, Gianluca; Rossi, Ernesto; Thomas, Andrew M.; Schinzari, Giovanni; Masucci, Luca; Quaranta, Gianluca; Settanni, Carlo Romano; Lopetuso, Loris Riccardo; Armanini, Federica; Blanco-Miguez, Aitor; Asnicar, Francesco; Consolandi, Clarissa; Iacovelli, Roberto; Sanguinetti, Maurizio; Tortora, Giampaolo; Gasbarrini, Antonio; Segata, Nicola; Cammarota, Giovanni
Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial
2023-01-01 Routy, Bertrand; Lenehan, John G.; Miller, Wilson H.; Jamal, Rahima; Messaoudene, Meriem; Daisley, Brendan A.; Hes, Cecilia; Al, Kait F.; Martinez-Gili, Laura; Punčochář, Michal; Ernst, Scott; Logan, Diane; Belanger, Karl; Esfahani, Khashayar; Richard, Corentin; Ninkov, Marina; Piccinno, Gianmarco; Armanini, Federica; Pinto, Federica; Krishnamoorthy, Mithunah; Figueredo, Rene; Thebault, Pamela; Takis, Panteleimon; Magrill, Jamie; Ramsay, Leeann; Derosa, Lisa; Marchesi, Julian R.; Parvathy, Seema Nair; Elkrief, Arielle; Watson, Ian R.; Lapointe, Rejean; Segata, Nicola; Haeryfar, S. M. Mansour; Mullish, Benjamin H.; Silverman, Michael S.; Burton, Jeremy P.; Maleki Vareki, Saman
Gut microbiome features in COVID-19: analysis of a cohort of hospitalized patients
2023-01-01 Caio, G.; Cultrera, R.; Blanco-Míguez, A.; Armanini, F.; Asnicar, F.; Catozzi, C.; Nezi, L.; Lungaro, L.; Costanzini, A.; Guarino, M.; Volpato, S.; Manza, F.; Segata, N.; De Giorgio, R.
How Inoculation Affects the Development and the Performances of Microalgal-Bacterial Consortia Treating Real Municipal Wastewater
2020-01-01 Petrini, S.; Foladori, P.; Beghini, F.; Armanini, F.; Segata, N.; Andreottola, G.
Immune system and intestinal microbiota determine efficacy of androgen deprivation therapy against prostate cancer
2022-01-01 Terrisse, Safae; Goubet, Anne-Gaelle; Ueda, Kousuke; Thomas, Andrew Maltez; Quiniou, Valentin; Thelemaque, Cassandra; Dunsmore, Garett; Clave, Emmanuel; Gamat-Huber, Melissa; Yonekura, Satoru; Ferrere, Gladys; Rauber, Conrad; Pham, Hang Phuong; Fahrner, Jean-Eudes; Pizzato, Eugenie; Ly, Pierre; Fidelle, Marine; Mazzenga, Marine; Costa Silva, Carolina Alves; Armanini, Federica; Pinto, Federica; Asnicar, Francesco; Daillère, Romain; Derosa, Lisa; Richard, Corentin; Blanchard, Pierre; Routy, Bertrand; Culine, Stéphane; Opolon, Paule; Silvin, Aymeric; Ginhoux, Florent; Toubert, Antoine; Segata, Nicola; Mcneel, Douglas G; Fizazi, Karim; Kroemer, Guido; Zitvogel, Laurence
Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma
2024-01-01 Björk, Johannes R.; Bolte, Laura A.; Maltez Thomas, Andrew; Lee, Karla A.; Rossi, Niccolo; Wind, Thijs T.; Smit, Lotte M.; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M.; Tamburini, Sabrina; Valpione, Sara; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G. E.; Nathan, Paul; Fehrmann, Rudolf S. N.; Spector, Tim D.; Bataille, Véronique; Segata, Nicola; Hospers, Geke A. P.; Weersma, Rinse K.
Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
2023-01-01 Manara, Serena; Selma-Royo, Marta; Huang, Kun D; Asnicar, Francesco; Armanini, Federica; Blanco-Miguez, Aitor; Cumbo, Fabio; Golzato, Davide; Manghi, Paolo; Pinto, Federica; Valles-Colomer, Mireia; Amoroso, Loredana; Corrias, Maria Valeria; Ponzoni, Mirco; Raffaetà, Roberta; Cabrera-Rubio, Raul; Olcina, Mari; Pasolli, Edoardo; Collado, Maria Carmen; Segata, Nicola
Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission
2017-01-01 Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Armanini, Federica; Turroni, Francesca; James, Kieran; Ferretti, Pamela; Gorfer, Valentina; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Zolfo, Moreno; Viappiani, Alice; Pasolli, Edoardo; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Fedi, Sabina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Soffiati, Massimo; Tateo, Saverio; Pedrotti, Anna; Segata, Nicola; van Sinderen, Douwe; Ventura, Marco
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
2019-01-01 Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M.; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, João Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola
MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice
2023-01-01 Manghi, Paolo; Blanco-Míguez, Aitor; Manara, Serena; Nabinejad, Amir; Cumbo, Fabio; Beghini, Francesco; Armanini, Federica; Golzato, Davide; Huang, Kun D; Thomas, Andrew M; Piccinno, Gianmarco; Punčochář, Michal; Zolfo, Moreno; Lesker, Till R; Bredon, Marius; Planchais, Julien; Glodt, Jeremy; Valles-Colomer, Mireia; Koren, Omry; Pasolli, Edoardo; Asnicar, Francesco; Strowig, Till; Sokol, Harry; Segata, Nicola
Methicillin-resistant Staphylococcus aureus eradication in cystic fibrosis patients: A randomized multicenter study
2019-01-01 Dolce, D.; Neri, S.; Grisotto, L.; Campana, S.; Ravenni, N.; Miselli, F.; Camera, E.; Zavataro, L.; Braggion, C.; Fiscarelli, E. V.; Lucidi, V.; Cariani, L.; Girelli, D.; Faelli, N.; Colombo, C.; Lucanto, C.; Lombardo, M.; Magazzu, G.; Tosco, A.; Raia, V.; Manara, S.; Pasolli, E.; Armanini, F.; Segata, N.; Biggeri, A.; Taccetti, G.