Manara, Serena
Manara, Serena
CIBIO (29/10/12-)
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
2020-01-01 Karcher, Nicolai; Pasolli, Edoardo; Asnicar, Francesco; Huang, Kun D.; Tett, Adrian; Manara, Serena; Armanini, Federica; Bain, Debbie; Duncan, Sylvia H.; Louis, Petra; Zolfo, Moreno; Manghi, Paolo; Valles-Colomer, Mireia; Raffaetà, Roberta; Rota-Stabelli, Omar; Collado, Maria Carmen; Zeller, Georg; Falush, Daniel; Maixner, Frank; Walker, Alan W.; Huttenhower, Curtis; Segata, Nicola
Coronaviruses and SARS-CoV-2 in sewerage and their removal: Step by step in wastewater treatment plants
2022-01-01 Foladori, P.; Cutrupi, F.; Cadonna, M.; Manara, S.
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019-01-01 Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
2021-01-01 Karcher, N.; Nigro, E.; Puncochar, M.; Blanco-Miguez, A.; Ciciani, M.; Manghi, P.; Zolfo, M.; Cumbo, F.; Manara, S.; Golzato, D.; Cereseto, A.; Arumugam, M.; Bui, T. P. N.; Tytgat, H. L. P.; Valles-Colomer, M.; de Vos, W. M.; Segata, N.
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
2019-01-01 Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M.; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, João Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola
Methicillin-resistant Staphylococcus aureus eradication in cystic fibrosis patients: A randomized multicenter study
2019-01-01 Dolce, D.; Neri, S.; Grisotto, L.; Campana, S.; Ravenni, N.; Miselli, F.; Camera, E.; Zavataro, L.; Braggion, C.; Fiscarelli, E. V.; Lucidi, V.; Cariani, L.; Girelli, D.; Faelli, N.; Colombo, C.; Lucanto, C.; Lombardo, M.; Magazzu, G.; Tosco, A.; Raia, V.; Manara, S.; Pasolli, E.; Armanini, F.; Segata, N.; Biggeri, A.; Taccetti, G.
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
2019-01-01 Manara, Serena; Asnicar, Francesco; Beghini, Francesco; Bazzani, Davide; Cumbo, Fabio; Zolfo, Moreno; Nigro, Eleonora; Karcher, Nicolai; Manghi, Paolo; Metzger, Marisa Isabell; Pasolli, Edoardo; Segata, Nicola
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
2018-01-01 Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Gorfer, Valentina; Fedi, Sabina; Armanini, Federica; Truong, Duy Tin; Manara, Serena; Zolfo, Moreno; Beghini, Francesco; Bertorelli, Roberto; De Sanctis, Veronica; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Turroni, Francesca; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Viappiani, Alice; Yassour, Moran; Vlamakis, Hera; Xavier, Ramnik; Collado, Carmen Maria; Koren, Omry; Tateo, Saverio; Soffiati, Massimo; Pedrotti, Anna; Ventura, Marco; Huttenhower, Curtis; Bork, Peer; Segata, Nicola
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
2020-01-01 Asnicar, Francesco; Thomas, Andrew Maltez; Beghini, Francesco; Mengoni, Claudia; Manara, Serena; Manghi, Paolo; Zhu, Qiyun; Bolzan, Mattia; Cumbo, Fabio; May, Uyen; Sanders, Jon G.; Zolfo, Moreno; Kopylova, Evguenia; Pasolli, Edoardo; Knight, Rob; Mirarab, Siavash; Huttenhower, Curtis; Segata, Nicola
Route of SARS-CoV-2 in Sewerage and Wastewater Treatment Plants: Dilution, Decay, Removal, and Environmental Transmission
2021-01-01 Foladori, Paola; Cutrupi, Francesca; Cadonna, Maria; Manara, Serena; Maestrini, Federica
SARS-CoV-2 from faeces to wastewater treatment: What do we know? A review
2020-01-01 Foladori, Paola; Cutrupi, Francesca; Segata, Nicola; Manara, Serena; Pinto, Federica; Malpei, Francesca; Bruni, Laura; La Rosa, Giuseppina
Strain-level (meta)genomic profiling of bacteria from hospital pathogens to non-human primate commensals
2019-10-30 Manara, Serena
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
2017-01-01 Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Truong, Duy Tin; Scholz, Matthias Uwe; Armanini, Federica; Ferretti, Pamela; Gorfer, Valentina; Pedrotti, Anna; Tett, Adrian James; Segata, Nicola
Surveillance of SARS-CoV-2 in extensive monitoring of municipal wastewater: Key issues to yield reliable results
2021-01-01 Cutrupi, F.; Cadonna, M.; Manara, S.; Foladori, P.
The person-to-person transmission landscape of the gut and oral microbiomes
2023-01-01 Valles-Colomer, Mireia; Blanco-Míguez, Aitor; Manghi, Paolo; Asnicar, Francesco; Dubois, Leonard; Golzato, Davide; Armanini, Federica; Cumbo, Fabio; Huang, Kun D; Manara, Serena; Masetti, Giulia; Pinto, Federica; Piperni, Elisa; Punčochář, Michal; Ricci, Liviana; Zolfo, Moreno; Farrant, Olivia; Goncalves, Adriana; Selma-Royo, Marta; Binetti, Ana G; Becerra, Jimmy E; Han, Bei; Lusingu, John; Amuasi, John; Amoroso, Loredana; Visconti, Alessia; Steves, Claire M; Falchi, Mario; Filosi, Michele; Tett, Adrian; Last, Anna; Xu, Qian; Qin, Nan; Qin, Huanlong; May, Jürgen; Eibach, Daniel; Corrias, Maria Valeria; Ponzoni, Mirco; Pasolli, Edoardo; Spector, Tim D; Domenici, Enrico; Collado, Maria Carmen; Segata, Nicola
The short-term impact of probiotic consumption on the oral cavity microbiome
2018-01-01 Dassi, Erik; Ferretti, Pamela; Covello, Giuseppina; Speccher, Alessandra; Migazzi, Alice; Bosco, Bartolomeo; Rajashekar, Bodike; Zarbo, Calogero; Ballabio, Claudio; Rossetto, Daniele; Maino, Eleonora; Corradi, Eloina; Costa, Federica; Precazzini, Francesca; Rashid, Harun Or; Nicolussi, Manuel; Bolzan, Mattia; Demozzi, Michele; Olivieri, Michele; Zordan, Nicole; Pedron, Renato; Manara, Serena; Rezvan, Setareh; Naik, Sindhu Narasimha; Khaghani, Solmaz; Masella, Stefania; Perli, Thomas; Pierini, Virginia; Bertorelli, Roberto; Denti, Michela A.; De Sanctis, Veronica; Tett, Adrian; Segata, Nicola
The Wave of the SARS-CoV-2 Omicron Variant Resulted in a Rapid Spike and Decline as Highlighted by Municipal Wastewater Surveillance
2022-01-01 Cutrupi, Francesca; Cadonna, Maria; Manara, Serena; Postinghel, Mattia; La Rosa, Giuseppina; Suffredini, Elisabetta; Foladori, Paola
Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital
2018-01-01 Manara, Serena; Pasolli, Edoardo; Dolce, Daniela; Ravenni, Novella; Campana, Silvia; Armanini, Federica; Asnicar, Francesco; Mengoni, Alessio; Galli, Luisa; Montagnani, Carlotta; Venturini, Elisabetta; Rota-Stabelli, Omar; Grandi, Guido; Taccetti, Giovanni; Segata, Nicola