Waldron, Levi David
Waldron, Levi David
CIBIO (29/10/12-)
Accessible, curated metagenomic data through ExperimentHub
2017-01-01 Pasolli, Edoardo; Schiffer, Lucas Michael; Manghi, Paolo; Renson, Audrey; Obenchain, Valerie; Truong, Duy Tin; Beghini, Francesco; Malik, Faizan; Ramos, Marcel; Dowd, Jennifer B; Huttenhower, Curtis; Morgan, Martin; Segata, Nicola; Waldron, Levi
BioBakery: A meta'omic analysis environment
2018-01-01 Mciver, Lauren J.; Abu-Ali, Galeb; Franzosa, Eric A.; Schwager, Randall; Morgan, Xochitl C.; Waldron, Levi; Segata, Nicola; Huttenhower, Curtis
BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures
2024-01-01 Geistlinger, Ludwig; Mirzayi, Chloe; Zohra, Fatima; Azhar, Rimsha; Elsafoury, Shaimaa; Grieve, Clare; Wokaty, Jennifer; Gamboa-Tuz, Samuel David; Sengupta, Pratyay; Hecht, Issac; Ravikrishnan, Aarthi; Gonçalves, Rafael S.; Franzosa, Eric; Raman, Karthik; Carey, Vincent; Dowd, Jennifer B.; Jones, Heidi E.; Davis, Sean; Segata, Nicola; Huttenhower, Curtis; Waldron, Levi
Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites
2016-01-01 Re, Angela; Waldron, Levi; Quattrone, Alessandro
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
2022-01-01 Lee, Karla A; Thomas, Andrew Maltez; Bolte, Laura A; Björk, Johannes R; de Ruijter, Laura Kist; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Leeming, Emily R; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M; Tamburini, Sabrina; Valpione, Sara; Vijay, Amrita; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G E; Nathan, Paul; Fehrmann, Rudolf S N; Bataille, Véronique; Hospers, Geke A P; Spector, Tim D; Weersma, Rinse K; Segata, Nicola
International Society for Extracellular Vesicles Workshop. QuantitatEVs: multiscale analyses, from bulk to single extracellular vesicle
2024-01-01 Basso, Manuela; Gori, Alessandro; Nardella, Caterina; Palviainen, Mari; Holcar, Marija; Sotiropoulos, Ioannis; Bobis-Wozowicz, Sylwia; D'Agostino, Vito G; Casarotto, Elena; Ciani, Yari; Suetsugu, Shiro; Gualerzi, Alice; Martin-Jaular, Lorena; Boselli, Daniela; Kashkanova, Anna; Parisse, Pietro; Lippens, Lien; Pagliuca, Martina; Blessing, Martin; Frigerio, Roberto; Fourniols, Thibaut; Meliciano, Ana; Fietta, Anna; Fioretti, Paolo Vincenzo; Soroczyńska, Karolina; Picciolini, Silvia; Salviano-Silva, Amanda; Bergese, Paolo; Zocco, Davide; Chiari, Marcella; Jenster, Guido; Waldron, Levi; Milosavljevic, Aleksandar; Nolan, John; Monopoli, Marco P; Witwer, Kenneth W; Bussolati, Benedetta; Di Vizio, Dolores; Falcon Perez, Juan; Lenassi, Metka; Cretich, Marina; Demichelis, Francesca
Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma
2024-01-01 Björk, Johannes R.; Bolte, Laura A.; Maltez Thomas, Andrew; Lee, Karla A.; Rossi, Niccolo; Wind, Thijs T.; Smit, Lotte M.; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M.; Tamburini, Sabrina; Valpione, Sara; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G. E.; Nathan, Paul; Fehrmann, Rudolf S. N.; Spector, Tim D.; Bataille, Véronique; Segata, Nicola; Hospers, Geke A. P.; Weersma, Rinse K.
Machine learning for microbiologists
2024-01-01 Asnicar, F.; Thomas, A. M.; Passerini, Andrea; Waldron, L.; Segata, N.
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
2021-01-01 Asnicar, Francesco; Berry, Sarah E.; Valdes, Ana M.; Nguyen, Long H.; Piccinno, Gianmarco; Drew, David A.; Leeming, Emily; Gibson, Rachel; Le Roy, Caroline; Khatib, Haya Al; Francis, Lucy; Mazidi, Mohsen; Mompeo, Olatz; Valles-Colomer, Mireia; Tett, Adrian; Beghini, Francesco; Dubois, Léonard; Bazzani, Davide; Thomas, Andrew Maltez; Mirzayi, Chloe; Khleborodova, Asya; Oh, Sehyun; Hine, Rachel; Bonnett, Christopher; Capdevila, Joan; Danzanvilliers, Serge; Giordano, Francesca; Geistlinger, Ludwig; Waldron, Levi; Davies, Richard; Hadjigeorgiou, George; Wolf, Jonathan; Ordovás, José M.; Gardner, Christopher; Franks, Paul W.; Chan, Andrew T.; Huttenhower, Curtis; Spector, Tim D.; Segata, Nicola
Reporting guidelines for human microbiome research: the STORMS checklist
2021-01-01 Mirzayi, Chloe; Renson, Audrey; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z; Macintyre, David A; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A; Bushman, Frederic; Casero, David; Clarke, Gerard; Collado, Maria Carmen; Cotter, Paul D; Cryan, John F; Demmer, Ryan T; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S; Fettweis, Jennifer; Finn, Robert D; Fodor, Anthony A; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S; Langille, Morgan; Lindsay, Brianna; Mcgovern, Dermot; Mchardy, Alice C; Mcweeney, Shannon; Mueller, Noel T; Nezi, Luigi; Olm, Matthew; Palm, Noah; Pasolli, Edoardo; Raes, Jeroen; Redinbo, Matthew R; Rühlemann, Malte; Balfour Sartor, R; Schloss, Patrick D; Schriml, Lynn; Segal, Eran; Shardell, Michelle; Sharpton, Thomas; Smirnova, Ekaterina; Sokol, Harry; Sonnenburg, Justin L; Srinivasan, Sujatha; Thingholm, Louise B; Turnbaugh, Peter J; Upadhyay, Vaibhav; Walls, Ramona L; Wilmes, Paul; Yamada, Takuji; Zeller, Georg; Zhang, Mingyu; Zhao, Ni; Zhao, Liping; Bao, Wenjun; Culhane, Aedin; Devanarayan, Viswanath; Dopazo, Joaquin; Fan, Xiaohui; Fischer, Matthias; Jones, Wendell; Kusko, Rebecca; Mason, Christopher E; Mercer, Tim R; Sansone, Susanna-Assunta; Scherer, Andreas; Shi, Leming; Thakkar, Shraddha; Tong, Weida; Wolfinger, Russ; Hunter, Christopher; Segata, Nicola; Huttenhower, Curtis; Dowd, Jennifer B; Jones, Heidi E; Waldron, Levi
Sociodemographic variation in the oral microbiome
2019-01-01 Renson, A.; Jones, H. E.; Beghini, F.; Segata, N.; Zolnik, C. P.; Usyk, M.; Moody, T. U.; Thorpe, L.; Burk, R.; Waldron, L.; Dowd, J. B.
Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study
2019-01-01 Beghini, F.; Renson, A.; Zolnik, C. P.; Geistlinger, L.; Usyk, M.; Moody, T. U.; Thorpe, L.; Dowd, J. B.; Burk, R.; Segata, N.; Jones, H. E.; Waldron, L.