Romanel, Alessandro
Romanel, Alessandro
CIBIO (29/10/12-)
A Formal and Integrated Framework to Simulate Evolution of Biological Pathways
2007-01-01 Demattè, Lorenzo; Priami, Corrado; Romanel, Alessandro; O., Soyer
ABEMUS: platform specific and data informed detection of somatic SNVs in cfDNA
2020-01-01 Casiraghi, Nicola; Orlando, Francesco; Ciani, Yari; Xiang, Jenny; Sboner, Andrea; Elemento, Olivier; Attard, Gerhardt; Beltran, Himisha; Demichelis, Francesca; Romanel, Alessandro
Allele-specific expression analysis in cancer using next-generation sequencing data
2019-01-01 Romanel, A.
Analytical protocol to identify local ancestry-associated molecular features in cancer
2021-01-01 Carrot-Zhang, Jian; Han, Seunghun; Zhou, Wanding; Damrauer, Jeffrey S; Kemal, Anab; Berger, Ashton C; Meyerson, Matthew; Hoadley, Katherine A; Felau, Ina; Caesar-Johnson, Samantha; Demchok, John A; Mensah, Michael Ka; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zenklusen, Jean C; Chambwe, Nyasha; Knijnenburg, Theo A; Robertson, A Gordon; Yau, Christina; Benz, Christopher; Huang, Kuan-Lin; Newberg, Justin; Frampton, Garret; Mashl, R Jay; Ding, Li; Romanel, Alessandro; Demichelis, Francesca; Sayaman, Rosalyn W; Ziv, Elad; Laird, Peter W; Shen, Hui; Wong, Christopher K; Stuart, Joshua M; Lazar, Alexander J; Le, Xiuning; Oak, Ninad; Cherniack, Andrew D; Beroukhim, Rameen
Ancestry-specific predisposing germline variants in cancer
2020-01-01 Oak, Ninad; Cherniack, Andrew D.; Mashl, R. Jay; Carrot-Zhang, Jian; Chambwe, Nyasha; Damrauer, Jeffrey; Knijnenburg, Theo; Robertson, A. Gordon; Yau, Christina; Zhou, Wanding; Berger, Ashton; Huang, Kuan-lin; Mashl, R. Jay; Newberg, Justin; Romanel, Alessandro; Sayaman, Rosalyn; Demichelis, Francesca; Felau, Ina; Frampton, Garret; Han, Seunghun; Hoadley, Katherine; Kemal, Anab; Laird, Peter; Lazar, Alexander; Le, Xiuning; Oak, Ninad; Shen, Hui; Wong, Christopher; Zenklusen, Jean; Ziv, Elad; Aguet, Francois; Ding, Li; Demchok, John; Mensah, Michael; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Alfoldi, Jessica; Karczewski, Konrad; Macarthur, Daniel; Frampton, Garret; Benz, Christopher; Stuart, Joshua; Hirsch, Fred R.; Ding, Li; Beroukhim, Rameen; Gümüş, Zeynep H.; Plon, Sharon E.; Huang, Kuan-lin
Androgen receptor gene status in plasma DNA associates with worse outcome on enzalutamide or abiraterone for castration-resistant prostate cancer: a multi-institution correlative biomarker study
2017-01-01 Conteduca, V; Wetterskog, D; Sharabiani, M. T. A; Grande, Elisabetta; Fernandez Perez, M. P; Jayaram, A; Salvi, S; Castellano, D; Romanel, Alessandro; Lolli, C; Casadio, V; Gurioli, G; Amadori, D; Font, A; Vazquez Estevez, S; González Del Alba, A; Mellado, B; Fernandez Calvo, O; Méndez Vidal, M. J; Climent, M. A; Duran, I; Gallardo, E; Rodriguez, A; Santander, C; Sáez, M. I; Puente, J; Gasi Tandefelt, D; Wingate, A; Dearnaley, D; Demichelis, Francesca; De Giorgi, U; Gonzalez Billalabeitia, E; Attard, G.
ASEQ: Fast allele-specific studies from next-generation sequencing data
2015-01-01 Romanel, Alessandro; Lago, Sara; Prandi, Davide; Sboner, Andrea; Demichelis, Francesca
BetaWB: modelling and simulating biological processes
2007-01-01 Demattè, Lorenzo; Priami, Corrado; Romanel, Alessandro
BlenX Static and Dynamic Semantics
2009-01-01 Priami, Corrado; Quaglia, Paola; Romanel, Alessandro
Calcium cytotoxicity sensitizes prostate cancer cells to standard-of-care treatments for locally advanced tumors
2020-01-01 Alaimo, A.; Lorenzoni, M.; Ambrosino, P.; Bertossi, A.; Bisio, A.; Macchia, A.; Zoni, E.; Genovesi, S.; Cambuli, F.; Foletto, V.; De Felice, D.; Soldovieri, M. V.; Mosca, I.; Gandolfi, F.; Brunelli, M.; Petris, G.; Cereseto, A.; Villarroel, A.; Thalmann, G.; Carbone, F. G.; Kruithof-de Julio, M.; Barbareschi, M.; Romanel, A.; Taglialatela, M.; Lunardi, A.
Circulating tumor DNA profile recognizes transformation to castration-resistant neuroendocrine prostate cancer
2020-01-01 Beltran, H.; Romanel, A.; Conteduca, V.; Casiraghi, N.; Sigouros, M.; Franceschini, G. M.; Orlando, F.; Fedrizzi, T.; Ku, S. -Y.; Dann, E.; Alonso, A.; Mosquera, J. M.; Sboner, A.; Xiang, J.; Elemento, O.; Nanus, D. M.; Tagawa, S. T.; Benelli, M.; Demichelis, F.
Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer
2020-01-01 Carrot-Zhang, Jian; Chambwe, Nyasha; Damrauer, Jeffrey S.; Knijnenburg, Theo A.; Robertson, A. Gordon; Yau, Christina; Zhou, Wanding; Berger, Ashton C.; Huang, Kuan-Iin; Newberg, Justin Y.; Mashl, R. Jay; Romanel, Alessandro; Sayaman, Rosalyn W.; Demichelis, Francesca; Felau, Ina; Frampton, Garrett M.; Han, Seunghun; Hoadley, Katherine A.; Kemal, Anab; Laird, Peter W.; Lazar, Alexander J.; Le, Xiuning; Oak, Ninad; Shen, Hui; Wong, Christopher K.; Zenklusen, Jean C.; Ziv, Elad; Cancer Genome Atlas Analysis, Network; Cherniack, Andrew D.; Beroukhim, Rameen
Core Biopsies from Prostate Cancer Patients in Active Surveillance Protocols Harbor PTEN and MYC Alterations
2019-01-01 Gandellini, P.; Casiraghi, N.; Rancati, T.; Benelli, M.; Doldi, V.; Romanel, A.; Colecchia, M.; Marenghi, C.; Valdagni, R.; Demichelis, F.; Zaffaroni, N.
Development and validation of a whole-exome sequencing test for simultaneous detection of point mutations, indels and copy-number alterations for precision cancer care
2016-01-01 Rennert, Hanna; Eng, Kenneth; Zhang, Tuo; Tan, Adrian; Xiang, Jenny; Romanel, Alessandro; Kim, Robert; Tam, Wayne; Liu, Yen Chun; Bhinder, Bhavneet; Cyrta, Joanna; Beltran, Himisha; Robinson, Brian; Mosquera, Juan Miguel; Fernandes, Helen; Demichelis, Francesca; Sboner, Andrea; Kluk, Michael; Rubin, Mark A; Elemento, Olivier
Distinct ERG rearrangement prevalence in prostate cancer: higher frequency in young age and in low PSA prostate cancer.
2013-01-01 G., Schaefer; Mosquera, J. M.; R., Ramoner; K., Park; Romanel, Alessandro; E., Steiner; W., Horninger; J., Bektic; M., Ladurner Rennau; Rubin, M. A.; Demichelis, Francesca; H., Klocker
Effective Index: A formal measure of drug effects
2007-01-01 Demattè, Lorenzo; Prandi, Davide; Priami, Corrado; Romanel, Alessandro
Estimating the divisibility of complex biological networks by sparseness indices
2010-01-01 Mazza, Tommaso; Romanel, Alessandro; F., Jordán
EthSEQ: ethnicity annotation from whole exome sequencing data
2017-01-01 Romanel, Alessandro; Zhang, Tuo; Elemento, Olivier; Demichelis, Francesca
ETS-related gene (ERG) undermines genome stability in mouse prostate progenitors via Gsk3β dependent Nkx3.1 degradation
2022-01-01 Lorenzoni, M.; De Felice, D.; Beccaceci, G.; Di Donato, G.; Foletto, V.; Genovesi, S.; Bertossi, A.; Cambuli, F.; Lorenzin, F.; Savino, A.; Avalle, L.; Cimadamore, A.; Montironi, R.; Weber, V.; Carbone, F. G.; Barbareschi, M.; Demichelis, F.; Romanel, A.; Poli, V.; Del Sal, G.; Julio, M. K. -D.; Gaspari, M.; Alaimo, A.; Lunardi, A.
Evolving BlenX programs to simulate the evolution of biological networks
2008-01-01 Demattè, Lorenzo; Priami, Corrado; Romanel, Alessandro; O., Soyer