Sfoglia per Autore
Metagenomics-based discovery of unknown bacteriophages In the human microbiome
2020-10-13 Zolfo, Moreno
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
2021-01-01 Beghini, Francesco; Mciver, Lauren J; Blanco-Míguez, Aitor; Dubois, Leonard; Asnicar, Francesco; Maharjan, Sagun; Mailyan, Ana; Manghi, Paolo; Scholz, Matthias; Thomas, Andrew Maltez; Valles-Colomer, Mireia; Weingart, George; Zhang, Yancong; Zolfo, Moreno; Huttenhower, Curtis; Franzosa, Eric A; Segata, Nicola
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
2021-01-01 Karcher, N.; Nigro, E.; Puncochar, M.; Blanco-Miguez, A.; Ciciani, M.; Manghi, P.; Zolfo, M.; Cumbo, F.; Manara, S.; Golzato, D.; Cereseto, A.; Arumugam, M.; Bui, T. P. N.; Tytgat, H. L. P.; Valles-Colomer, M.; de Vos, W. M.; Segata, N.
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
2022-01-01 Lee, Karla A; Thomas, Andrew Maltez; Bolte, Laura A; Björk, Johannes R; de Ruijter, Laura Kist; Armanini, Federica; Asnicar, Francesco; Blanco-Miguez, Aitor; Board, Ruth; Calbet-Llopart, Neus; Derosa, Lisa; Dhomen, Nathalie; Brooks, Kelly; Harland, Mark; Harries, Mark; Leeming, Emily R; Lorigan, Paul; Manghi, Paolo; Marais, Richard; Newton-Bishop, Julia; Nezi, Luigi; Pinto, Federica; Potrony, Miriam; Puig, Susana; Serra-Bellver, Patricio; Shaw, Heather M; Tamburini, Sabrina; Valpione, Sara; Vijay, Amrita; Waldron, Levi; Zitvogel, Laurence; Zolfo, Moreno; de Vries, Elisabeth G E; Nathan, Paul; Fehrmann, Rudolf S N; Bataille, Véronique; Hospers, Geke A P; Spector, Tim D; Weersma, Rinse K; Segata, Nicola
Automated identification of sequence-tailored Cas9 proteins using massive metagenomic data
2022-01-01 Ciciani, Matteo; Demozzi, Michele; Pedrazzoli, Eleonora; Visentin, Elisabetta; Pezzè, Laura; Signorini, Lorenzo Federico; Blanco-Miguez, Aitor; Zolfo, Moreno; Asnicar, Francesco; Casini, Antonio; Cereseto, Anna; Segata, Nicola
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
2023-01-01 Blanco-Míguez, Aitor; Beghini, Francesco; Cumbo, Fabio; Mciver, Lauren J.; Thompson, Kelsey N.; Zolfo, Moreno; Manghi, Paolo; Dubois, Leonard; Huang, Kun D.; Thomas, Andrew Maltez; Nickols, William A.; Piccinno, Gianmarco; Piperni, Elisa; Punčochář, Michal; Valles-Colomer, Mireia; Tett, Adrian; Giordano, Francesca; Davies, Richard; Wolf, Jonathan; Berry, Sarah E.; Spector, Tim D.; Franzosa, Eric A.; Pasolli, Edoardo; Asnicar, Francesco; Huttenhower, Curtis; Segata, Nicola
MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice
2023-01-01 Manghi, Paolo; Blanco-Míguez, Aitor; Manara, Serena; Nabinejad, Amir; Cumbo, Fabio; Beghini, Francesco; Armanini, Federica; Golzato, Davide; Huang, Kun D; Thomas, Andrew M; Piccinno, Gianmarco; Punčochář, Michal; Zolfo, Moreno; Lesker, Till R; Bredon, Marius; Planchais, Julien; Glodt, Jeremy; Valles-Colomer, Mireia; Koren, Omry; Pasolli, Edoardo; Asnicar, Francesco; Strowig, Till; Sokol, Harry; Segata, Nicola
The person-to-person transmission landscape of the gut and oral microbiomes
2023-01-01 Valles-Colomer, Mireia; Blanco-Míguez, Aitor; Manghi, Paolo; Asnicar, Francesco; Dubois, Leonard; Golzato, Davide; Armanini, Federica; Cumbo, Fabio; Huang, Kun D; Manara, Serena; Masetti, Giulia; Pinto, Federica; Piperni, Elisa; Punčochář, Michal; Ricci, Liviana; Zolfo, Moreno; Farrant, Olivia; Goncalves, Adriana; Selma-Royo, Marta; Binetti, Ana G; Becerra, Jimmy E; Han, Bei; Lusingu, John; Amuasi, John; Amoroso, Loredana; Visconti, Alessia; Steves, Claire M; Falchi, Mario; Filosi, Michele; Tett, Adrian; Last, Anna; Xu, Qian; Qin, Nan; Qin, Huanlong; May, Jürgen; Eibach, Daniel; Corrias, Maria Valeria; Ponzoni, Mirco; Pasolli, Edoardo; Spector, Tim D; Domenici, Enrico; Collado, Maria Carmen; Segata, Nicola
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