Mitsuaria sp. TWR114 is a biocontrol agent against tomato bacterial wilt (TBW). We aimed to gain genomic insights relevant to the biocontrol mechanisms and colonization ability of this strain. The draft genome size was found to be 5,632,523 bp, with a GC content of 69.5%, assembled into 1144 scaffolds. Genome annotation predicted a total of 4675 protein coding sequences (CDSs), 914 pseudogenes, 49 transfer RNAs, 3 noncoding RNAs, and 2 ribosomal RNAs. Genome analysis identified multiple CDSs associated with various pathways for the metabolism and transport of amino acids and carbohydrates, motility and chemotactic capacities, protection against stresses (oxidative, antibiotic, and phage), production of secondary metabolites, peptidases, quorum-quenching enzymes, and indole-3-acetic acid, as well as protein secretion systems and their related appendages. The genome resource will extend our understanding of the genomic features related to TWR114’s biocontrol and colonization abilities and facilitate its development as a new biopesticide against TBW.

Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114 / Marian, M.; Fujikawa, T.; Shimizu, M.. - In: ARCHIVES OF MICROBIOLOGY. - ISSN 0302-8933. - ELETTRONICO. - 203:6(2021), pp. 3373-3388. [10.1007/s00203-021-02327-1]

Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114

Marian M.;
2021

Abstract

Mitsuaria sp. TWR114 is a biocontrol agent against tomato bacterial wilt (TBW). We aimed to gain genomic insights relevant to the biocontrol mechanisms and colonization ability of this strain. The draft genome size was found to be 5,632,523 bp, with a GC content of 69.5%, assembled into 1144 scaffolds. Genome annotation predicted a total of 4675 protein coding sequences (CDSs), 914 pseudogenes, 49 transfer RNAs, 3 noncoding RNAs, and 2 ribosomal RNAs. Genome analysis identified multiple CDSs associated with various pathways for the metabolism and transport of amino acids and carbohydrates, motility and chemotactic capacities, protection against stresses (oxidative, antibiotic, and phage), production of secondary metabolites, peptidases, quorum-quenching enzymes, and indole-3-acetic acid, as well as protein secretion systems and their related appendages. The genome resource will extend our understanding of the genomic features related to TWR114’s biocontrol and colonization abilities and facilitate its development as a new biopesticide against TBW.
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Marian, M.; Fujikawa, T.; Shimizu, M.
Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114 / Marian, M.; Fujikawa, T.; Shimizu, M.. - In: ARCHIVES OF MICROBIOLOGY. - ISSN 0302-8933. - ELETTRONICO. - 203:6(2021), pp. 3373-3388. [10.1007/s00203-021-02327-1]
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Utilizza questo identificativo per citare o creare un link a questo documento: http://hdl.handle.net/11572/329068
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