We describe a novel application of a stochastic name passing calculus for the study of biomolecular systems. We specify the structure and dynamics of biochemical networks in a variant of the stochastic P-calculus, yielding a model which is mathematically welldefined and biologically faithful. We adapt the operational semantics of the calculus to account for both the time and probability of biochemical reactions, and present a computer implementation of the calculus for biochemical simulations.
Application of a stochastic name-passing calculus to representation and simulation of molecular processes / Regev, Aviv; Shapiro, Ehud; Priami, Corrado; Silverman, William. - ELETTRONICO. - (2001), pp. 1-10.
Application of a stochastic name-passing calculus to representation and simulation of molecular processes
Priami, Corrado;
2001-01-01
Abstract
We describe a novel application of a stochastic name passing calculus for the study of biomolecular systems. We specify the structure and dynamics of biochemical networks in a variant of the stochastic P-calculus, yielding a model which is mathematically welldefined and biologically faithful. We adapt the operational semantics of the calculus to account for both the time and probability of biochemical reactions, and present a computer implementation of the calculus for biochemical simulations.| File | Dimensione | Formato | |
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