We describe a novel application of a stochastic name passing calculus for the study of biomolecular systems. We specify the structure and dynamics of biochemical networks in a variant of the stochastic P-­calculus, yielding a model which is mathematically well­defined and biologically faithful. We adapt the operational semantics of the calculus to account for both the time and probability of biochemical reactions, and present a computer implementation of the calculus for biochemical simulations.

Application of a stochastic name-­passing calculus to representation and simulation of molecular processes / Regev, Aviv; Shapiro, Ehud; Priami, Corrado; Silverman, William. - ELETTRONICO. - (2001), pp. 1-10.

Application of a stochastic name-­passing calculus to representation and simulation of molecular processes

Priami, Corrado;
2001-01-01

Abstract

We describe a novel application of a stochastic name passing calculus for the study of biomolecular systems. We specify the structure and dynamics of biochemical networks in a variant of the stochastic P-­calculus, yielding a model which is mathematically well­defined and biologically faithful. We adapt the operational semantics of the calculus to account for both the time and probability of biochemical reactions, and present a computer implementation of the calculus for biochemical simulations.
2001
Trento, Italia
Università degli Studi di Trento. DEPARTMENT OF INFORMATION AND COMMUNICATION TECHNOLOGY
Application of a stochastic name-­passing calculus to representation and simulation of molecular processes / Regev, Aviv; Shapiro, Ehud; Priami, Corrado; Silverman, William. - ELETTRONICO. - (2001), pp. 1-10.
Regev, Aviv; Shapiro, Ehud; Priami, Corrado; Silverman, William
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11572/358343
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