| Nome |
# |
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Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm, file e3835192-0391-72ef-e053-3705fe0ad821
|
1.535
|
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Mechanistic interplay between ceramide and insulin resistance, file e3835193-63c5-72ef-e053-3705fe0ad821
|
443
|
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On the rejection-based algorithm for simulation and analysis of large-scale reaction networks, file e3835192-0bde-72ef-e053-3705fe0ad821
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229
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Multi-omics integration-a comparison of unsupervised clustering methodologies, file e3835199-379a-72ef-e053-3705fe0ad821
|
220
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Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy, file e3835195-ad21-72ef-e053-3705fe0ad821
|
198
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Quantitative analysis reveals how EGFR activation and downregulation are coupled in normal but not in cancer cells, file e3835192-025f-72ef-e053-3705fe0ad821
|
196
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Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations, file e3835192-0435-72ef-e053-3705fe0ad821
|
176
|
|
Novel drug target identification for the treatment of dementia using multi-relational association mining, file e3835192-0393-72ef-e053-3705fe0ad821
|
165
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|
Efficient Constant-Time Complexity Algorithm for Stochastic Simulation of Large Reaction Networks, file e3835193-109b-72ef-e053-3705fe0ad821
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155
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Regulatory Crosstalk of Doxorubicin, Estradiol and TNFα Combined Treatment in Breast Cancer-derived Cell Lines, file e3835195-c3c0-72ef-e053-3705fe0ad821
|
152
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A Novel Insulin/Glucose Model after a Mixed-Meal Test in Patients with Type 1 Diabetes on Insulin Pump Therapy, file e3835193-1f13-72ef-e053-3705fe0ad821
|
148
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A network-based approach to identify deregulated pathways and drug effects in metabolic syndrome, file e3835197-353a-72ef-e053-3705fe0ad821
|
137
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Optimization Algorithms for Computational Systems Biology, file e3835193-8abe-72ef-e053-3705fe0ad821
|
134
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null, file e3835192-0362-72ef-e053-3705fe0ad821
|
119
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Cross-disease analysis of Alzheimer’s disease and type-2 Diabetes highlights the role of autophagy in the pathophysiology of two highly comorbid diseases, file e3835197-0af8-72ef-e053-3705fe0ad821
|
111
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On the rejection-based algorithm for simulation and analysis of large-scale reaction networks, file e3835192-030c-72ef-e053-3705fe0ad821
|
89
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A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology, file e3835199-358e-72ef-e053-3705fe0ad821
|
63
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null, file e3835198-3210-72ef-e053-3705fe0ad821
|
60
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null, file e3835198-3d5e-72ef-e053-3705fe0ad821
|
53
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QSPcc reduces bottlenecks in computational model simulations, file e3835199-304a-72ef-e053-3705fe0ad821
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48
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Literature Mining and Mechanistic Graphical Modelling to Improve mRNA Vaccine Platforms, file e3835199-304c-72ef-e053-3705fe0ad821
|
47
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Book of abstracts: Scientific Opening of The Microsoft Reasearch Centre for Computational and Systems Biology, Trento, Italy, April 3-5, 2006, file b2944878-5c33-43e0-9e27-89f46111d431
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44
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A closed-loop multi-level model of glucose homeostasis, file e3835198-e233-72ef-e053-3705fe0ad821
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41
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Exploring the limitations of peripheral blood transcriptional biomarkers in predicting influenza vaccine responsiveness, file e3835199-5338-72ef-e053-3705fe0ad821
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36
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Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73), file e3835198-3197-72ef-e053-3705fe0ad821
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31
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Application of a stochastic name-passing calculus to representation and simulation of molecular processes, file 2502ea0d-d80d-4f1a-863c-c4abea5aa241
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28
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Causality and replication in concurrent processes, file b2225d48-072f-42bc-ad15-473ec3f3bdb0
|
25
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Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease, file e3835198-0dbc-72ef-e053-3705fe0ad821
|
16
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The 5-formyltetrahydrofolate futile cycle reduces pathway stochasticity in an extended hybrid-stochastic model of folate-mediated one-carbon metabolism, file e3835198-e22f-72ef-e053-3705fe0ad821
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12
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Identification of an early transcriptomic signature of insulin resistance and related diseases in lymphomonocytes of healthy subjects, file e3835198-e235-72ef-e053-3705fe0ad821
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12
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HSimulator: Hybrid Stochastic/Deterministic Simulation of Biochemical Reaction Networks, file e3835198-e232-72ef-e053-3705fe0ad821
|
11
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A hybrid stochastic model of folate-mediated one-carbon metabolism: Effect of the common C677T MTHFR variant on de novo thymidylate biosynthesis, file e3835198-e231-72ef-e053-3705fe0ad821
|
9
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Modeling and Simulating Bio-Molecule Diffusion in Non-Homogeneous Solutions. Diffusive Spatial Effects on Chaperone-Assisted Protein Folding: A Case Study, file 03fe708f-7325-41b9-bc30-76bc673ee4ae
|
8
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Towards the integration of computational systems biology and high-throughput data: a way to support differential analysis of microarray gene expression data, file 417bd57c-0c1e-4ec7-8006-71358888a4f2
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8
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Stochastic pi-calculus Modelling of Multisite Phosphorylation Based Signaling: In Silico Analysis of the Pho4 Transcription Factor and the PHO Pathway in Saccharomyces Cerevisiae, file 254f453b-1b1b-4d55-ab8c-7cdae2d93ed0
|
7
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Towards the integration of computational systems biology and high-throughput data: a way to support differential analysis of microarray gene expression data, file c1a124eb-1d7d-4ea3-9ff7-15b8e4ef6671
|
7
|
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Narrative-based Computational Modelling of the Gp130/JAK/STAT Signalling Pathway, file 080d692f-42ed-49b1-88df-65f05af548fb
|
6
|
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A Formal and Integrated Framework to Simulate Evolution of Biological Pathways, file 1927e408-e7b4-4600-b87a-91c438f61eef
|
6
|
|
Simulation of non-Markovian Processes in BlenX, file 2941d4ca-5be3-47ef-9ae4-d42fb8b98b5c
|
6
|
|
Causal P-Calculus for Biochemical Modelling, file 72e5b160-b368-4d99-bcbd-900b497c96d7
|
6
|
|
Process Calculi Abstractions for Biology, file 9dc1e472-2abd-4136-9ad4-1c433e15b3d7
|
6
|
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The pi-calculus with Biological Transactions, file eba1d071-c373-45fa-8597-65ac25601027
|
6
|
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Authentication Primitives for Refining Protocol Specifications, file f88d645e-c3b6-44c9-b7f4-de5315c6ddf8
|
6
|
|
Causality and Concurrency in Beta-binders, file 0bf87e68-92a2-4142-9f28-7b3a8be15828
|
5
|
|
Beta-binders with Static Compartments, file 1c53f317-89dd-4998-beb6-e762f1eb4133
|
5
|
|
Model Checking Dynamic-Epistemic Spatial Logic, file 39c267d7-de51-4d1d-8b59-096e5cd170e1
|
5
|
|
Primitives for Authentication in Process Algebras, file 5a17c15d-5ef3-4606-981c-b12d5e7766fe
|
5
|
|
Simulating Reaction-Diffusion with State-Dependent Diffusion Coefficients, file 65f4af62-6253-4a58-950d-88f6ef56c2e4
|
5
|
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Dynamic Epistemic Spatial Logic, file 738bc3b8-a445-4bf5-9b12-39cef878c794
|
5
|
|
Calibration of Biochemical Network Models, file 89bbe88d-8bbe-4515-9867-69a7bbf2731c
|
5
|
|
On the Decidability and Complexity of the Structural Congruence for Beta-binders, file bcb63703-fb30-4ed4-bd89-ed8008e9ffab
|
5
|
|
A Propositional Branching Temporal Logic for the Ambient Calculus, file c0672ba5-48a7-4394-b167-3f1b8667224b
|
5
|
|
Dynamic-Epistemic Spatial Logic, file d8a0fe36-e04d-4b05-9abc-d3bf62422e50
|
5
|
|
Cell Cycle Control in Eukaryotes: a BioSpi model, file d9c1f5ff-489c-4c83-bf63-04976869dc2f
|
5
|
|
A Parallel Beta-binders Simulator, file e8343a62-a6ae-4c76-b3c9-4d8c5daaf640
|
5
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|
Rate Sensitivity Analysis of a Beta Binders Model of Lymphocyte Recruitment Control Mechanism, file fc666473-9be3-48fe-a4a9-ccc3a6eb3774
|
5
|
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From BlenX to Chemical Reactions via SBML, file 0649d7d8-1d83-44a3-bffa-f6442b13d6ee
|
4
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|
Inferring Rate Coefficents of Biochemical Reactions from Noisy Data with KInfer, file 09396828-c53a-439b-afa6-f5b87c7cfc56
|
4
|
|
Proceedings of International Workshop Global Computing: Programming Environments, file 1210a825-1235-4381-814a-77d29404606b
|
4
|
|
Extraction of pi-calculus specifications from UML sequence and state diagrams, file 75cdf8c5-2e06-46e4-be61-7adfa5cf0732
|
4
|
|
Beta-binders with Biological Transactions, file 931112b5-2f7d-490b-b886-de177bb86c50
|
4
|
|
On the Computational Power of BlenX, file 9746ed97-bdd4-4d99-b73a-f40bccdfbbc6
|
4
|
|
Control Flow Analysis for BioAmbients, file b16c8def-1c26-4dc4-a8d8-e647ed579912
|
4
|
|
A Decidable Extension of Hennessy-Milner Logic with Spatial Operators, file d8076703-bc28-4924-87c0-5aab42afbb5a
|
4
|
|
A New Model for Kinetic Parameter Estimation in Biochemical Reactions., file d9409923-d77c-4f46-8311-46e8f7ed007d
|
4
|
|
A BetaWB Model for the NFkB Pathway, file da69e760-c4a3-493a-baa7-354c64e4c80a
|
4
|
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From Solvable to Executable Models of Biological Systems, file e0a43174-a395-40c7-871f-43c1ccfd4d1e
|
4
|
|
Narrative-Based Computational Modelling of the Gp130/JAK/STAT Signalling Pathway, file e3835191-d1ca-72ef-e053-3705fe0ad821
|
4
|
|
Graphical Modelling Tools for Systems Biology, file e3835192-5cb9-72ef-e053-3705fe0ad821
|
4
|
|
Computing the accessibility relation for the Ambient Calculus, file ebc0d9c5-9dd9-4930-95b2-4da789eed1d8
|
4
|
|
Computational Thinking in Biology, file faae4cdc-f3c5-4cf1-a750-d81ada8fd7d2
|
4
|
|
The BlenX Language: A Tutorial, file fe6c4df5-5708-4ab3-9ae7-30f489c598ae
|
4
|
|
The Beta Workbench, file 474c1017-a39d-416e-9728-b0afac42188d
|
3
|
|
Performance Evaluation of Mobile Processes via Abstract Machines, file 511d0222-bfc2-4010-bf45-0a2682824edb
|
3
|
|
The principles of ambient calculus revisited, file 916ae33d-038d-477d-9a70-d654987efe0c
|
3
|
|
Predicting cell adhesion probability via the biochemical stochastic pi-calculus, file 96779534-79eb-4b6f-9f92-a4c5d7b9ed9d
|
3
|
|
Design Environments for Complex Systems, file 97c0e1b7-1827-4411-8f72-628a861fc31f
|
3
|
|
Algorithmic Systems Biology: An Opportunity for Computer Science, file b38df1f7-672d-48af-84a2-281ba2ce1509
|
3
|
|
Static Analysis for Systems Biology, file d50d1163-4986-43e2-9e80-cb6cb85d36e7
|
3
|
|
Efficient rejection-based simulation of biochemical reactions with stochastic noise and delays, file e3835192-38fb-72ef-e053-3705fe0ad821
|
3
|
|
Biological network inference for drug discovery, file e3835192-5cba-72ef-e053-3705fe0ad821
|
3
|
|
l: An imperative DSL to stochastically simulate biological systems, file e3835193-1463-72ef-e053-3705fe0ad821
|
3
|
|
Effective Index: A Formal Measure of Drug Effects, file e7acc71a-4102-4e2e-836f-249fe505444d
|
3
|
|
Automated Generation of Narrative Language Programs from NCI-Nature's Pathway Interaction Database, file f6a87492-5dd8-4cb3-93f0-2afde05dd1eb
|
3
|
|
Language-Based Performance Prediction for Distributed and Mobile Systems, file 13e57111-7b82-47c5-becb-d485a8a35498
|
2
|
|
An Automated Translation from a Narrative Language for Biological Modelling into Process Algebra, file 7d464dcc-4f33-45c1-8d5e-48278f21e186
|
2
|
|
An imperative language of self-modifying graphs for biological systems, file e3835192-9028-72ef-e053-3705fe0ad821
|
2
|
|
Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability, file e3835193-1466-72ef-e053-3705fe0ad821
|
2
|
|
Efficient stochastic simulation of biochemical reactions with noise and delays, file e3835194-350b-72ef-e053-3705fe0ad821
|
2
|
|
Efficient Constant-Time Complexity Algorithm for Stochastic Simulation of Large Reaction Networks, file e3835198-a037-72ef-e053-3705fe0ad821
|
2
|
|
Incorporating extrinsic noise into the stochastic simulation of biochemical reactions: A comparison of approaches, file e3835199-3728-72ef-e053-3705fe0ad821
|
2
|
|
A robust computational pipeline for model-based and data-driven phenotype clustering, file e3835199-65d8-72ef-e053-3705fe0ad821
|
2
|
|
Simulation Algorithms for Computational Systems Biology, file e3835199-65e3-72ef-e053-3705fe0ad821
|
2
|
|
Enhanced Operational Semantics in Systems Biology, file 276e073e-6b67-4b28-aa1c-d65c930ff32f
|
1
|
|
On the Computational Power of BlenX, file 3e39401e-f142-445d-b4de-da0a9741769d
|
1
|
|
Systems view of adipogenesis via novel omics-driven and tissue-specific activity scoring of network functional modules, file e35fe893-a025-449d-b50d-def77cf47c81
|
1
|
|
Network Inference from Time-Dependent Omics Data, file e3835191-d28a-72ef-e053-3705fe0ad821
|
1
|
|
Process Calculi Abstractions for Biology, file e3835191-d28c-72ef-e053-3705fe0ad821
|
1
|
|
Analysis of biological systems, file e3835192-601c-72ef-e053-3705fe0ad821
|
1
|
|
null, file e3835196-4f17-72ef-e053-3705fe0ad821
|
1
|
| Totale |
5.005 |