Sfoglia per Autore
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
2015-01-01 Asnicar, Francesco; Weingart, George; Tickle, Timothy L.; Huttenhower, Curtis; Segata, Nicola
TN-Grid and gene@home Project: Volunteer Computing for Bioinformatics
2015-01-01 Asnicar, Francesco; Sella, Nadir; Masera, Luca; Morettin, Paolo; Tolio, Thomas; Semeniuta, Stanislau; Moser, Claudio; Blanzieri, Enrico; Cavecchia, Valter
Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing
2015-01-01 Asnicar, Francesco; Erculiani, Luca; Galante, Francesca; Gallo, Caterina; Masera, Luca; Morettin, Paolo; Sella, Nadir; Semeniuta, Stanislau; Tolio, Thomas; Malacarne, Giulia; Engelen, Kristof; Argentini, Andrea; Cavecchia, Valter; Moser, Claudio; Blanzieri, Enrico
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
2016-01-01 Scholz, Matthias Uwe; Ward, Doyle V.; Pasolli, Edoardo; Tolio, Thomas; Zolfo, Moreno; Asnicar, Francesco; Truong, Duy Tin; Tett, Adrian James; Morrow, Ardythe L.; Segata, Nicola
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
2016-01-01 Donati, Claudio; Zolfo, Moreno; Albanese, Davide; Tin Truong, Duy; Asnicar, Francesco; Iebba, Valerio; Cavalieri, Duccio; Jousson, Olivier; De Filippo, Carlotta; Huttenhower, Curtis; Segata, Nicola
Draft genome sequence of the planktic cyanobacterium Tychonema bourrellyi, isolated from Alpine lentic freshwater
2017-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
2017-01-01 Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Truong, Duy Tin; Scholz, Matthias Uwe; Armanini, Federica; Ferretti, Pamela; Gorfer, Valentina; Pedrotti, Anna; Tett, Adrian James; Segata, Nicola
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
2017-01-01 Tett, Adrian James; Pasolli, Edoardo; Farina, Stefania; Truong, Duy Tin; Asnicar, Francesco; Zolfo, Moreno; Beghini, Francesco; Armanini, Federica; Jousson, Olivier; De Sanctis, Veronica; Bertorelli, Roberto; Girolomoni, Giampiero; Cristofolini, Mario; Segata, Nicola
Draft genome sequences of novel Pseudomonas, Flavobacterium, and Sediminibacterium species strains from a freshwater ecosystem
2018-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
NES2RA: Network expansion by stratified variable subsetting and ranking aggregation
2018-01-01 Asnicar, Francesco; Masera, Luca; Coller, Emanuela; Gallo, Caterina; Sella, Nadir; Tolio, Thomas; Morettin, Paolo; Erculiani, Luca; Galante, Francesca; Semeniuta, Stanislau; Malacarne, Giulia; Engelen, Kristof; Argentini, Andrea; Cavecchia, Valter; Moser, Claudio; Blanzieri, Enrico
Discovering causal relationships in grapevine expression data to expand gene networks. A case study: four networks related to climate change
2018-01-01 Malacarne, Giulia; Pilati, Stefania; Valentini, Samuel; Asnicar, Francesco; Moretto, Marco; Sonego, Paolo; Masera, Luca; Cavecchia, Valter; Blanzieri, Enrico; Moser, Claudio
Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital
2018-01-01 Manara, Serena; Pasolli, Edoardo; Dolce, Daniela; Ravenni, Novella; Campana, Silvia; Armanini, Federica; Asnicar, Francesco; Mengoni, Alessio; Galli, Luisa; Montagnani, Carlotta; Venturini, Elisabetta; Rota-Stabelli, Omar; Grandi, Guido; Taccetti, Giovanni; Segata, Nicola
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
2018-01-01 Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Gorfer, Valentina; Fedi, Sabina; Armanini, Federica; Truong, Duy Tin; Manara, Serena; Zolfo, Moreno; Beghini, Francesco; Bertorelli, Roberto; De Sanctis, Veronica; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Turroni, Francesca; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Viappiani, Alice; Yassour, Moran; Vlamakis, Hera; Xavier, Ramnik; Collado, Carmen Maria; Koren, Omry; Tateo, Saverio; Soffiati, Massimo; Pedrotti, Anna; Ventura, Marco; Huttenhower, Curtis; Bork, Peer; Segata, Nicola
Profiling microbial strains in urban environments using metagenomic sequencing data
2018-01-01 Zolfo, Moreno; Asnicar, Francesco; Manghi, Paolo; Pasolli, Edoardo; Tett, Adrian; Segata, Nicola
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
2018-01-01 Yassour, Moran; Jason, Eeva; Hogstrom, Larson J.; Arthur, Timothy D.; Tripathi, Surya; Siljander, Heli; Selvenius, Jenni; Oikarinen, Sami; Hyöty, Heikki; Virtanen, Suvi M.; Ilonen, Jorma; Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Segata, Nicola; Vlamakis, Hera; Lander, Eric S.; Huttenhower, Curtis; Knip, Mikael; Xavier, Ramnik J.
A phylogenetic framework for large-scale analysis of microbial communities
2019-01-01 Asnicar, Francesco
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
2019-01-01 Bolyen, Evan; Rideout, Jai Ram; Dillon, Matthew R.; Bokulich, Nicholas A.; Abnet, Christian C.; Al-Ghalith, Gabriel A.; Alexander, Harriet; Alm, Eric J.; Arumugam, Manimozhiyan; Asnicar, Francesco; Bai, Yang; Bisanz, Jordan E.; Bittinger, Kyle; Brejnrod, Asker; Brislawn, Colin J.; Brown, C. Titus; Callahan, Benjamin J.; Caraballo-Rodríguez, Andrés Mauricio; Chase, John; Cope, Emily K.; Da Silva, Ricardo; Diener, Christian; Dorrestein, Pieter C.; Douglas, Gavin M.; Durall, Daniel M.; Duvallet, Claire; Edwardson, Christian F.; Ernst, Madeleine; Estaki, Mehrbod; Fouquier, Jennifer; Gauglitz, Julia M.; Gibbons, Sean M.; Gibson, Deanna L.; Gonzalez, Antonio; Gorlick, Kestrel; Guo, Jiarong; Hillmann, Benjamin; Holmes, Susan; Holste, Hannes; Huttenhower, Curtis; Huttley, Gavin A.; Janssen, Stefan; Jarmusch, Alan K.; Jiang, Lingjing; Kaehler, Benjamin D.; Kang, Kyo Bin; Keefe, Christopher R.; Keim, Paul; Kelley, Scott T.; Knights, Dan; Koester, Irina; Kosciolek, Tomasz; Kreps, Jorden; Langille, Morgan G. I.; Lee, Joslynn; Ley, Ruth; Liu, Yong-Xin; Loftfield, Erikka; Lozupone, Catherine; Maher, Massoud; Marotz, Clarisse; Martin, Bryan D.; Mcdonald, Daniel; Mciver, Lauren J.; Melnik, Alexey V.; Metcalf, Jessica L.; Morgan, Sydney C.; Morton, Jamie T.; Naimey, Ahmad Turan; Navas-Molina, Jose A.; Nothias, Louis Felix; Orchanian, Stephanie B.; Pearson, Talima; Peoples, Samuel L.; Petras, Daniel; Preuss, Mary Lai; Pruesse, Elmar; Rasmussen, Lasse Buur; Rivers, Adam; Robeson, Michael S.; Rosenthal, Patrick; Segata, Nicola; Shaffer, Michael; Shiffer, Arron; Sinha, Rashmi; Song, Se Jin; Spear, John R.; Swafford, Austin D.; Thompson, Luke R.; Torres, Pedro J.; Trinh, Pauline; Tripathi, Anupriya; Turnbaugh, Peter J.; Ul-Hasan, Sabah; van der Hooft, Justin J. J.; Vargas, Fernando; Vázquez-Baeza, Yoshiki; Vogtmann, Emily; von Hippel, Max; Walters, William; Wan, Yunhu; Wang, Mingxun; Warren, Jonathan; Weber, Kyle C.; Williamson, Charles H. D.; Willis, Amy D.; Xu, Zhenjiang Zech; Zaneveld, Jesse R.; Zhang, Yilong; Zhu, Qiyun; Knight, Rob; Caporaso, J. Gregory
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019-01-01 Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
2019-01-01 Zhu, Qiyun; Mai, Uyen; Pfeiffer, Wayne; Janssen, Stefan; Asnicar, Francesco; Sanders, Jon G.; Belda-Ferre, Pedro; Al-Ghalith, Gabriel A.; Kopylova, Evguenia; Mcdonald, Daniel; Kosciolek, Tomasz; Yin, John B.; Huang, Shi; Salam, Nimaichand; Jiao, Jian-Yu; Wu, Zijun; Xu, Zhenjiang Z.; Cantrell, Kalen; Yang, Yimeng; Sayyari, Erfan; Rabiee, Maryam; Morton, James T.; Podell, Sheila; Knights, Dan; Li, Wen-Jun; Huttenhower, Curtis; Segata, Nicola; Smarr, Larry; Mirarab, Siavash; Knight, Rob
Detecting contamination in viromes using ViromeQC
2019-01-01 Zolfo, Moreno; Pinto, Federica; Asnicar, Francesco; Manghi, Paolo; Tett, Adrian; Bushman, Frederic D; Segata, Nicola
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