Sfoglia per Autore
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
2015-01-01 Truong, Duy Tin; Franzosa, Eric A; Tickle, Timothy L; Scholz, Matthias Uwe; Weingart, George; Pasolli, Edoardo; Tett, Adrian James; Huttenhower, Curtis; Segata, Nicola
Exploring Vertical Transmission of Bifidobacteria from Mother to Child
2015-01-01 Milani, Christian; Mancabelli, Leonardo; Lugli, Gabriele Andrea; Duranti, Sabrina; Turroni, Francesca; Ferrario, Chiara; Mangifesta, Marta; Viappiani, Alice; Ferretti, Pamela; Gorfer, Valentina; Tett, Adrian James; Segata, Nicola; van Sinderen, Douwe; Ventura, Marco
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
2016-01-01 Scholz, Matthias Uwe; Ward, Doyle V.; Pasolli, Edoardo; Tolio, Thomas; Zolfo, Moreno; Asnicar, Francesco; Truong, Duy Tin; Tett, Adrian James; Morrow, Ardythe L.; Segata, Nicola
Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
2016-01-01 Ward, Doyle V; Scholz, Matthias Uwe; Zolfo, Moreno; Taft, Diana H.; Schibler, Kurt R.; Tett, Adrian James; Segata, Nicola; Morrow, Ardythe L.
Draft genome sequence of the planktic cyanobacterium Tychonema bourrellyi, isolated from Alpine lentic freshwater
2017-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
2017-01-01 Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Truong, Duy Tin; Scholz, Matthias Uwe; Armanini, Federica; Ferretti, Pamela; Gorfer, Valentina; Pedrotti, Anna; Tett, Adrian James; Segata, Nicola
MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
2017-01-01 Zolfo, Moreno; Tett, Adrian James; Jousson, Olivier; Donati, Claudio; Segata, Nicola
Experimental metagenomics and ribosomal profiling of the human skin microbiome
2017-01-01 Ferretti, Pamela; Farina, Stefania; Cristofolini, Mario; Girolomoni, Giampiero; Tett, Adrian James; Segata, Nicola
Microbial strain-level population structure and genetic diversity from metagenomes
2017-01-01 Truong, Duy Tin; Tett, Adrian James; Pasolli, Edoardo; Huttenhower, Curtis; Segata, Nicola
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
2017-01-01 Tett, Adrian James; Pasolli, Edoardo; Farina, Stefania; Truong, Duy Tin; Asnicar, Francesco; Zolfo, Moreno; Beghini, Francesco; Armanini, Federica; Jousson, Olivier; De Sanctis, Veronica; Bertorelli, Roberto; Girolomoni, Giampiero; Cristofolini, Mario; Segata, Nicola
Draft genome sequences of novel Pseudomonas, Flavobacterium, and Sediminibacterium species strains from a freshwater ecosystem
2018-01-01 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
The short-term impact of probiotic consumption on the oral cavity microbiome
2018-01-01 Dassi, Erik; Ferretti, Pamela; Covello, Giuseppina; Speccher, Alessandra; Migazzi, Alice; Bosco, Bartolomeo; Rajashekar, Bodike; Zarbo, Calogero; Ballabio, Claudio; Rossetto, Daniele; Maino, Eleonora; Corradi, Eloina; Costa, Federica; Precazzini, Francesca; Rashid, Harun Or; Nicolussi, Manuel; Bolzan, Mattia; Demozzi, Michele; Olivieri, Michele; Zordan, Nicole; Pedron, Renato; Manara, Serena; Rezvan, Setareh; Naik, Sindhu Narasimha; Khaghani, Solmaz; Masella, Stefania; Perli, Thomas; Pierini, Virginia; Bertorelli, Roberto; Denti, Michela A.; De Sanctis, Veronica; Tett, Adrian; Segata, Nicola
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
2018-01-01 Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Gorfer, Valentina; Fedi, Sabina; Armanini, Federica; Truong, Duy Tin; Manara, Serena; Zolfo, Moreno; Beghini, Francesco; Bertorelli, Roberto; De Sanctis, Veronica; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Turroni, Francesca; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Viappiani, Alice; Yassour, Moran; Vlamakis, Hera; Xavier, Ramnik; Collado, Carmen Maria; Koren, Omry; Tateo, Saverio; Soffiati, Massimo; Pedrotti, Anna; Ventura, Marco; Huttenhower, Curtis; Bork, Peer; Segata, Nicola
Profiling microbial strains in urban environments using metagenomic sequencing data
2018-01-01 Zolfo, Moreno; Asnicar, Francesco; Manghi, Paolo; Pasolli, Edoardo; Tett, Adrian; Segata, Nicola
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
2018-01-01 Yassour, Moran; Jason, Eeva; Hogstrom, Larson J.; Arthur, Timothy D.; Tripathi, Surya; Siljander, Heli; Selvenius, Jenni; Oikarinen, Sami; Hyöty, Heikki; Virtanen, Suvi M.; Ilonen, Jorma; Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Segata, Nicola; Vlamakis, Hera; Lander, Eric S.; Huttenhower, Curtis; Knip, Mikael; Xavier, Ramnik J.
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019-01-01 Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola
Consumer Safety Considerations of Skin and Oral Microbiome Perturbation
2019-01-01 Mcbain, A. J.; O'Neill, C. A.; Amezquita, A.; Price, L. J.; Faust, K.; Tett, A.; Segata, N.; Swann, J. R.; Smith, A. M.; Murphy, B.; Hoptroff, M.; Pattison, James Geoffrey Clifford; Reddy, Y.; Dasgupta, A.; Ross, T.; Chapple, I. L.; Wade, W. G.; Fernandez-Piquer, J.
Detecting contamination in viromes using ViromeQC
2019-01-01 Zolfo, Moreno; Pinto, Federica; Asnicar, Francesco; Manghi, Paolo; Tett, Adrian; Bushman, Frederic D; Segata, Nicola
Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates
2019-01-01 Fehlner-Peach, Hannah; Magnabosco, Cara; Raghavan, Varsha; Scher, Jose U.; Tett, Adrian; Cox, Laura M.; Gottsegen, Claire; Watters, Aaron; Wiltshire-Gordon, John D.; Segata, Nicola; Bonneau, Richard; Littman, Dan R.
Genomic and metagenomic insights into the microbial community of a thermal spring
2019-01-01 Pedron, Renato; Esposito, Alfonso; Bianconi, Irene; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Cristofolini, Mario; Segata, Nicola; Jousson, Olivier
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